# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 2.62e-07 2plrA 213 7.85e-07 1znwA 207 8.89e-07 c.37.1.1 125412 2qorA 204 9.79e-07 4tmkA 213 1.25e-06 c.37.1.1 31930 2ccjA 205 1.60e-06 1p5zB 263 2.21e-06 c.37.1.1 87815 1z6gA 218 2.71e-06 2j41A 207 3.70e-06 2bwjA 199 4.04e-06 1z8fA 228 4.15e-06 1gtvA 214 6.76e-06 c.37.1.1 70537 1ukzA 203 9.26e-06 c.37.1.1 31840 2z0hA 197 1.48e-05 1kjwA 295 2.06e-05 b.34.2.1,c.37.1.1 68643,68644 2c95A 196 2.27e-05 2cdnA 201 2.51e-05 c.37.1.1 130289 1s4qA 228 3.30e-05 c.37.1.1 98507 1ex7A 186 5.63e-05 c.37.1.1 59537 1ukz 203 6.56e-05 1ki9A 192 0.000114 c.37.1.1 84404 1qf9A 194 0.000149 c.37.1.1 31848 2axpA 173 0.000284 c.37.1.1 127497 3tmkA 216 0.000301 c.37.1.1 31920 1vhtA 218 0.000306 c.37.1.1 100700 2vp4A 230 0.000346 1of1A 376 0.000381 c.37.1.1 103924 1oe0A 230 0.000419 c.37.1.1 92788 1p6xA 334 0.000518 c.37.1.1 94195 1t3lA 337 0.000560 b.34.2.1,c.37.1.1 106358,106359 1qhxA 178 0.000617 c.37.1.3 31936 1zm7A 230 0.000669 1e2kA 331 0.000855 c.37.1.1 31854 1t0hB 224 0.000976 c.37.1.1 106208 1knqA 175 0.001076 c.37.1.17 72786 1gky 187 0.001135 1y63A 184 0.001170 c.37.1.1 116494 1e6cA 173 0.001188 c.37.1.2 59296 1kdoA 227 0.001261 c.37.1.1 68478 2f6rA 281 0.001848 1qhiA 366 0.002294 c.37.1.1 31860 2eu8A 216 0.002668 2bdtA 189 0.002772 c.37.1.25 128344 1n3bA 216 0.003235 c.37.1.1 79959 1zd8A 227 0.003347 1nksA 194 0.003627 c.37.1.1 31886 1p3jA 217 0.003685 c.37.1.1,g.41.2.1 94022,94023 1kgdA 180 0.003727 c.37.1.1 68582 1e4yA 214 0.003752 c.37.1.1,g.41.2.1 31901,45181 2rgxA 206 0.003875 1ckeA 227 0.004031 c.37.1.1 31846 1khtA 192 0.004110 c.37.1.1 84401 1zinA 217 0.004694 c.37.1.1,g.41.2.1 31915,45178 2ak3A 226 0.004900 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.005044 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.005373 c.37.1.2 134519 1xrjA 261 0.005539 c.37.1.6 122256 1akyA 220 0.005568 c.37.1.1,g.41.2.1 31896,45197 2ax4A 198 0.005679 1zin 217 0.005796 2rhmA 193 0.006912 2an9A 207 0.007015 c.37.1.1 127037 1nn5A 215 0.007692 c.37.1.1 85892 2iyvA 184 0.01042 c.37.1.2 137812 1m7gA 211 0.01211 c.37.1.4 78724 1jjvA 206 0.01481 c.37.1.1 71698 3be4A 217 0.01759 1uj2A 252 0.01798 c.37.1.6 99452 2qgnA 322 0.02062 1viaA 175 0.02489 c.37.1.2 100754 2yvuA 186 0.02669 1zuhA 168 0.02810 3crrA 323 0.03363 1kagA 173 0.03866 c.37.1.2 72249 2pezA 179 0.03961 3c8uA 208 0.04816 2pt5A 168 0.06156 1s96A 219 0.07056 c.37.1.1 98740 2qt1A 207 0.07283 1rkbA 173 0.08782 c.37.1.1 111854 1ltqA 301 0.2738 c.108.1.9,c.37.1.1 78208,78209 1a7jA 290 0.2825 c.37.1.6 31952 2ga8A 359 0.5068 2grjA 192 0.6698 1a7j 290 1.048 1ly1A 181 1.083 c.37.1.1 74334 1dekA 241 2.155 c.37.1.1 31842 1sq5A 308 2.213 c.37.1.6 105882 2p67A 341 2.549 2p5tB 253 2.842 2f1rA 171 3.803 1z47A 355 4.041 1nijA 318 4.056 c.37.1.10,d.237.1.1 85741,85742 1xx6A 191 4.064 c.37.1.24,g.39.1.14 116139,116140 2ze7A 253 4.154 1esmA 316 4.393 c.37.1.6 31953 2orwA 184 6.208 1nf3A 195 7.773 c.37.1.8 85594 2r44A 331 8.009 1vplA 256 8.548 c.37.1.12 113966 1xmiA 291 8.751 c.37.1.12 115489 1yqtA 538 8.897 1g6oA 330 9.587 c.37.1.11 32430 1rz3A 201 10.17 c.37.1.6 98132 2it1A 362 10.27 2bbsA 290 11.17 2qi9C 249 11.49 2d2eA 250 11.75 1xwiA 322 11.82 2qu8A 228 11.88 1ji0A 240 12.42 c.37.1.12 71665 1r0wA 286 13.16 c.37.1.12 96754 2b8tA 223 13.60 c.37.1.24,g.39.1.14 128109,128110 2f9lA 199 13.63 c.37.1.8 133166 1ycdA 243 13.66 2fh5B 214 14.06 c.37.1.8 133478 2pzeA 229 14.19 2cbzA 237 14.78 1oixA 191 16.83 c.37.1.8 118710 1a5t 334 16.86 2eyuA 261 16.91 2hxsA 178 17.53 2qy9A 309 18.01 2chgA 226 18.01 2gf9A 189 18.11 2ihyA 279 18.74 1xtqA 177 22.18 c.37.1.8 122297 1ihuA 589 22.36 c.37.1.10,c.37.1.10 62394,62395 1d6jA 211 22.60 c.37.1.4 31940 1tx4B 178 22.78 c.37.1.8 32045 2ffqA 171 23.19 2rexB 197 23.36 2pjzA 263 23.93 1z2aA 168 24.43 c.37.1.8 124374 2bmeA 186 24.60 c.37.1.8 128790 3b9qA 302 24.80 1gvnB 287 25.21 c.37.1.21 76354 1z0jA 170 25.43 c.37.1.8 124319 1vg8A 207 26.15 c.37.1.8 108606 2px0A 296 26.18 1ls1A 295 26.68 a.24.13.1,c.37.1.10 78170,78171 2iwrA 178 27.99 1sxjA 511 28.12 a.80.1.1,c.37.1.20 106081,106082 1zu4A 320 28.14 2ixeA 271 28.38 1rj9A 304 28.92 a.24.13.1,c.37.1.10 97553,97554 2a9kA 187 29.46 c.37.1.8 126442 1wf3A 301 29.99 c.37.1.8,d.52.3.1 114574,114575 2bcgY 206 30.07 c.37.1.8 128285 2atvA 196 30.63 c.37.1.8 127308 1z06A 189 30.76 c.37.1.8 124301 1nsf 273 31.19 1t9hA 307 31.20 b.40.4.5,c.37.1.8 112358,112359 2vhjA 331 31.54 1nrjB 218 31.59 c.37.1.8 86125 2atxA 194 32.08 c.37.1.8 127315 1kmqA 184 32.13 c.37.1.8 84412 2c2hA 192 32.20 c.37.1.8 129668 2g6bA 180 32.64 c.37.1.8 134701 1yrbA 262 32.95 c.37.1.10 123915 1jx2B 315 33.80 c.37.1.8 67404 2ff7A 247 33.90 c.37.1.12 133377 2r2aA 199 34.16 1lnzA 342 34.47 b.117.1.1,c.37.1.8 78112,78113 1w4rA 195 34.64 1x1rA 178 35.34 c.37.1.8 121595 1xjcA 169 36.19 c.37.1.10 115387 1kaoA 167 36.86 c.37.1.8 32014 1mh1 186 37.31 1ukvY 206 37.52 c.37.1.8 107918 1j8mF 297 37.78 a.24.13.1,c.37.1.10 62742,62743 1x6vA 630 38.27 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2erxA 172 38.74 c.37.1.8 132304 1w5tA 412 38.89 a.4.5.11,c.37.1.20 114255,114256 2nq2C 253 39.01 1g8yA 279 39.06 c.37.1.11 32302 2og2A 359 39.30 2fn4A 181 39.32 c.37.1.8 133806 1yzqA 170 39.38 c.37.1.8 124286 1g6hA 257 39.53 c.37.1.12 60318 2ce2X 166 40.32 1ny6A 267 40.95 c.37.1.20 92321 1w44A 331 41.51 c.37.1.11 114147 1np6A 174 42.57 c.37.1.10 85954 1vmaA 306 42.73 a.24.13.1,c.37.1.10 108887,108888 1sgwA 214 42.79 c.37.1.12 105541 1g38A 393 47.40 c.66.1.27,d.287.1.1 111567,111568 2a5dA 175 48.43 c.37.1.8 126172 2q3fA 181 48.73 1bifA 469 48.94 c.37.1.7,c.60.1.4 31961,34003 3b9pA 297 51.60 2pmkA 243 52.16 1x3sA 195 53.07 c.37.1.8 121670 1g41A 444 53.36 c.37.1.20 32450 1m7bA 184 53.38 c.37.1.8 74572 2pt7A 330 54.21 2dykA 161 55.59 3bosA 242 55.60 1sxjE 354 55.63 a.80.1.1,c.37.1.20 106089,106090 1odfA 290 55.78 c.37.1.6 92782 2p5sA 199 57.12 1oxsC 353 57.19 b.40.6.3,c.37.1.12 87519,87520 1l2tA 235 57.62 c.37.1.12 73514 1htwA 158 58.92 c.37.1.18 71083 2reb 352 59.19 1oxxK 353 59.33 b.40.6.3,c.37.1.12 93715,93716 2cxxA 190 59.60 c.37.1.8 131013 1z08A 170 62.04 c.37.1.8 124303 2qm8A 337 62.40 2h17A 181 62.43 2ew1A 201 64.23 c.37.1.8 132446 1sviA 195 64.37 c.37.1.8 106048 1f6bA 198 64.60 c.37.1.8 64986 3c5cA 187 65.36 2gj8A 172 65.76 c.37.1.8 135270 1zd9A 188 66.29 c.37.1.8 124938 2dpxA 174 67.56 1l1eA 287 68.72 c.66.1.18 73454 2p65A 187 69.27 2pcjA 224 69.40 2gjsA 176 70.32 c.37.1.8 135287 2bmjA 178 71.56 c.37.1.8 128797 3rabA 169 74.03 c.37.1.8 32018 1in4A 334 74.40 a.4.5.11,c.37.1.20 62597,62598 1mh1A 186 75.24 c.37.1.8 32002 1u9iA 519 75.44 c.37.1.11,c.37.1.11 119637,119638 1h1nA 305 75.66 c.1.8.3 70855 2q3hA 201 76.24 1r2qA 170 76.73 c.37.1.8 96874 2gcoA 201 77.39 1egaA 301 77.96 c.37.1.8,d.52.3.1 32150,38836 1in6A 334 81.86 a.4.5.11,c.37.1.20 62601,62602 1uptA 171 82.16 c.37.1.8 99767 2eryA 172 82.85 c.37.1.8 132306 1mvwA 840 83.99 i.15.1.1 79523 1xbtA 193 85.99 c.37.1.24,g.39.1.14 115080,115081 2fnaA 357 87.68 a.4.5.11,c.37.1.20 133809,133810 1r4aA 165 88.37 c.37.1.8 96986 1tq6A 413 88.96 c.37.1.8 107202