# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 0.9686 1z6gA 218 1.038 1z8fA 228 1.096 2pbrA 195 1.423 1znwA 207 1.479 c.37.1.1 125412 2ccjA 205 1.654 4tmkA 213 1.731 c.37.1.1 31930 2plrA 213 1.863 2bwjA 199 1.985 1ex7A 186 2.052 c.37.1.1 59537 1s4qA 228 2.115 c.37.1.1 98507 2an9A 207 3.135 c.37.1.1 127037 2j41A 207 3.375 1s96A 219 3.639 c.37.1.1 98740 1p5zB 263 3.713 c.37.1.1 87815 2c95A 196 3.738 2cdnA 201 3.921 c.37.1.1 130289 1ukzA 203 4.078 c.37.1.1 31840 1gky 187 4.128 1qf9A 194 4.690 c.37.1.1 31848 1xrjA 261 4.780 c.37.1.6 122256 2z0hA 197 5.027 2axpA 173 5.311 c.37.1.1 127497 2f6rA 281 5.865 1uj2A 252 6.003 c.37.1.6 99452 1ak2A 233 7.131 c.37.1.1,g.41.2.1 31894,45195 1vhtA 218 7.276 c.37.1.1 100700 1nn5A 215 7.290 c.37.1.1 85892 1ki9A 192 7.665 c.37.1.1 84404 2qt1A 207 8.246 1zinA 217 9.805 c.37.1.1,g.41.2.1 31915,45178 1jjvA 206 10.41 c.37.1.1 71698 1y63A 184 10.82 c.37.1.1 116494 1qhxA 178 11.59 c.37.1.3 31936 2rgxA 206 11.69 1kdoA 227 12.80 c.37.1.1 68478 1kjwA 295 13.17 b.34.2.1,c.37.1.1 68643,68644 1ukz 203 13.63 1rkbA 173 13.74 c.37.1.1 111854 1e6cA 173 13.79 c.37.1.2 59296 1oe0A 230 14.04 c.37.1.1 92788 2vp4A 230 14.30 1t0hB 224 14.47 c.37.1.1 106208 2ak3A 226 14.68 c.37.1.1,g.41.2.1 31892,45193 1gtvA 214 14.95 c.37.1.1 70537 1zm7A 230 15.37 1zd8A 227 15.84 1knqA 175 16.44 c.37.1.17 72786 3tmkA 216 16.80 c.37.1.1 31920 1n3bA 216 16.95 c.37.1.1 79959 2eu8A 216 18.25 3be4A 217 18.86 2yvuA 186 19.87 1nksA 194 19.89 c.37.1.1 31886 1akyA 220 20.43 c.37.1.1,g.41.2.1 31896,45197 1p6xA 334 20.90 c.37.1.1 94195 1ckeA 227 20.91 c.37.1.1 31846 2bdtA 189 21.73 c.37.1.25 128344 1kgdA 180 21.73 c.37.1.1 68582 2g1kA 176 23.11 c.37.1.2 134519 1t3lA 337 23.15 b.34.2.1,c.37.1.1 106358,106359 2iyvA 184 24.32 c.37.1.2 137812 1yrbA 262 24.73 c.37.1.10 123915 1p3jA 217 25.71 c.37.1.1,g.41.2.1 94022,94023 1zuhA 168 26.29 1zin 217 26.42 3c8uA 208 26.73 2pt5A 168 28.93 2ax4A 198 31.49 1viaA 175 31.73 c.37.1.2 100754 1khtA 192 34.19 c.37.1.1 84401 2pezA 179 39.24 1of1A 376 47.41 c.37.1.1 103924 2qgnA 322 48.37 2rhmA 193 50.47 3crrA 323 57.37 1kagA 173 59.92 c.37.1.2 72249 2rexB 197 65.17 2bbsA 290 66.21 1xtqA 177 66.53 c.37.1.8 122297 2grjA 192 66.85 1e4yA 214 70.91 c.37.1.1,g.41.2.1 31901,45181 1yqgA 263 71.08 1egaA 301 73.55 c.37.1.8,d.52.3.1 32150,38836 1ny6A 267 74.43 c.37.1.20 92321 2ga8A 359 74.65 1m7gA 211 74.94 c.37.1.4 78724 3rabA 169 78.27 c.37.1.8 32018 1esmA 316 78.64 c.37.1.6 31953 1r0wA 286 79.18 c.37.1.12 96754 2bmeA 186 82.72 c.37.1.8 128790 1sq5A 308 83.91 c.37.1.6 105882 2fn4A 181 84.19 c.37.1.8 133806 1kpgA 287 85.19 c.66.1.18 68735