PFRMAT RR
TARGET T0419
AUTHOR 4008-1775-0004
REMARK From group SAM-TO6 under the direction of
REMARK Kevin Karplus.
REMARK Residue-residue contact predictions
REMARK  by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network.
METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net
METHOD Inputs may include separation and sequence length,
METHOD e-value statistic based on mutual information values,
METHOD a statistic based on propensity of residues in contact.
METHOD Other inputs are distributions from alignments and
METHOD secondary predictions from SAM-t04 and/or SAM-t06 of
METHOD the University of California, Santa Cruz
MODEL 1
KRFRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA
QPYLWRFWRHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEIN
DFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNR
DKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAA
YKKDK
294 305 0 8 0.543947
294 308 0 8 0.482812
294 309 0 8 0.498376
294 310 0 8 0.475036
294 311 0 8 0.612232
294 313 0 8 0.544198
294 322 0 8 0.432534
294 329 0 8 0.433803
294 332 0 8 0.458408
294 333 0 8 0.451555
295 305 0 8 0.509805
295 310 0 8 0.44027
295 311 0 8 0.505395
296 305 0 8 0.54867
296 310 0 8 0.454123
296 311 0 8 0.490952
297 310 0 8 0.441362
297 311 0 8 0.432641
298 307 0 8 0.585441
298 308 0 8 0.479034
298 310 0 8 0.428312
298 322 0 8 0.708023
298 329 0 8 0.781872
298 332 0 8 0.781757
298 333 0 8 0.729059
298 335 0 8 0.443099
298 357 0 8 0.565717
298 360 0 8 0.42625
298 361 0 8 0.441729
298 363 0 8 0.573672
298 378 0 8 0.433586
298 403 0 8 0.731831
298 404 0 8 0.755371
298 406 0 8 0.592095
298 423 0 8 0.527469
298 470 0 8 0.574639
299 318 0 8 0.626498
299 322 0 8 0.819663
299 327 0 8 0.825132
299 329 0 8 0.772831
299 330 0 8 0.732483
299 352 0 8 0.573288
299 358 0 8 0.666618
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299 393 0 8 0.447314
299 397 0 8 0.532037
299 405 0 8 0.848751
299 407 0 8 0.447114
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END