# List of top-scoring protein chains for T0417.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.63e-09 d.108.1.1 84979 1yr0A 175 7.31e-09 d.108.1.1 123905 2j8mA 172 2.27e-08 1yvoA 172 2.34e-08 d.108.1.1 124106 2cntA 160 3.06e-08 2ae6A 166 2.88e-07 d.108.1.1 126600 2pdoA 144 1.19e-06 1vhsA 175 1.29e-06 d.108.1.1 100698 2fe7A 166 2.34e-06 d.108.1.1 133325 1y9kA 157 2.76e-06 d.108.1.1 122779 1z4eA 153 1.02e-05 d.108.1.1 124431 2ge3A 170 1.69e-05 d.108.1.1 135044 2q4vA 170 1.81e-05 d.108.1.1 139878 2dxqA 150 1.91e-05 1wwzA 159 1.98e-05 d.108.1.1 121380 1u6mA 199 3.02e-05 d.108.1.1 113069 2b5gB 171 3.92e-05 d.108.1.1 127893 2jevA 174 3.96e-05 d.108.1.1 138287 2cy2A 174 4.18e-05 d.108.1.1 131016 2g3tA 179 4.23e-05 d.108.1.1 134572 2b5gA 171 4.27e-05 d.108.1.1 127892 2fxfA 170 4.46e-05 d.108.1.1 134308 2b3uA 171 4.78e-05 d.108.1.1 127797 1yvkA 163 6.87e-05 d.108.1.1 124101 1s3zA 165 7.40e-05 d.108.1.1 105250 2i79A 172 8.67e-05 1tiqA 180 9.66e-05 d.108.1.1 107010 2euiA 153 0.000167 d.108.1.1 132387 1ufhA 180 0.000413 d.108.1.1 88485 1on0A 158 0.000413 d.108.1.1 87095 1bo4A 168 0.000478 d.108.1.1 40798 1qsmA 152 0.000635 d.108.1.1 40808 2ob0A 170 0.000645 2r98A 456 0.000750 2atrA 138 0.000823 d.108.1.1 127305 2r7hA 177 0.000831 1qsoA 149 0.000863 d.108.1.1 40812 1i1dA 161 0.001097 d.108.1.1 61526 2i6cA 160 0.001112 d.108.1.1 137095 1i12A 160 0.001115 d.108.1.1 61515 1i21A 159 0.001142 d.108.1.1 61549 2aj6A 159 0.001503 d.108.1.1 126841 2q0yA 153 0.001623 3blnA 143 0.001704 1vkcA 158 0.001778 d.108.1.1 113663 1ib1E 200 0.001845 d.108.1.1 62137 1kuxA 207 0.001852 d.108.1.1 73021 3c26A 266 0.002029 2ozhA 142 0.002307 1b6bA 174 0.002379 d.108.1.1 40819 2prbA 196 0.002414 1cjwA 166 0.002469 d.108.1.1 40818 1l0cA 207 0.002499 d.108.1.1 73393 2qecA 204 0.002516 1yx0A 159 0.002858 d.108.1.1 124168 2ganA 190 0.003153 d.108.1.1 134889 2r1iA 172 0.004517 2o28A 184 0.004520 1gheA 177 0.004638 d.108.1.1 76222 2pr8A 196 0.007878 2fl4A 149 0.009934 d.108.1.1 133706 2fiwA 172 0.01054 d.108.1.1 133539 1p0hA 318 0.01452 d.108.1.1 93866 2c27A 315 0.01454 d.108.1.1 129659 1cm0A 168 0.01532 d.108.1.1 40800 2g3aA 152 0.01778 d.108.1.1 134557 1qstA 160 0.01786 d.108.1.1 40804 2reeA 224 0.01797 5gcnA 166 0.01829 d.108.1.1 40807 1m1dA 163 0.01829 d.108.1.1 78397 1qsrA 162 0.01830 d.108.1.1 40805 1z4rA 168 0.01888 d.108.1.1 124444 2q7bA 181 0.02766 1yghA 164 0.03226 d.108.1.1 40802 2fckA 181 0.03372 d.108.1.1 133272 1n71A 180 0.03572 d.108.1.1 85370 1xebA 150 0.03594 d.108.1.1 115219 1b87A 181 0.03602 d.108.1.1 40797 2a4nA 182 0.03627 d.108.1.1 126159 1y9wA 140 0.03702 d.108.1.1 122783 2fiaA 162 0.05979 d.108.1.1 133514 1sqhA 312 0.07356 d.108.1.5 98966 1q2yA 140 0.09032 d.108.1.1 95655 2ozgA 396 0.09650 2pc1A 201 0.1820 2oh1A 179 0.2097 1y7rA 133 0.2459 d.108.1.1 122716 2ft0A 235 0.2507 1s7fA 199 0.2853 d.108.1.1 118877 1s7kA 182 0.2913 d.108.1.1 118878 1z9uA 179 0.2976 d.108.1.1 124770 1r57A 102 0.3158 d.108.1.1 97080 2jdcA 146 0.4060 1m4iA 181 0.4288 d.108.1.1 74457 2q04A 211 0.5623 2pr1A 163 0.7582 1nslA 184 1.496 d.108.1.1 86137 2qmlA 198 3.202 1rxtA 496 3.891 d.108.1.2,d.108.1.2 118793,118794 2d4oA 141 7.340 1iykA 392 7.843 d.108.1.2,d.108.1.2 76958,76959 1bobA 320 10.50 d.108.1.1 40816 2d4pA 141 10.77 2fsrA 195 11.40 d.108.1.1 134036 1mj9A 278 12.76 d.108.1.1 79190 1mjbA 278 14.24 d.108.1.1 79192 1fy7A 278 14.26 d.108.1.1 40817 1mjaA 278 18.35 d.108.1.1 79191 2rc4A 287 18.59 1yreA 197 21.69 d.108.1.1 123919 2ozuA 284 23.17 d.108.1.1 139451 2pq8A 278 24.87 2givA 295 25.29 d.108.1.1 135253 2ou2A 280 38.05 1o50A 157 39.57 d.37.1.1,d.37.1.1 92478,92479 1kmzA 130 52.28 d.32.1.2 72759 2a4xA 138 54.36 d.32.1.2 126166 1iicA 422 72.53 d.108.1.2,d.108.1.2 62422,62423 2p6eA 455 72.66 2qh1A 198 75.51 1pvmA 184 76.84 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1kllA 130 89.66 d.32.1.2 72720