# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.89e-13 d.108.1.1 84979 2pdoA 144 3.24e-12 1yr0A 175 4.23e-12 d.108.1.1 123905 1vhsA 175 5.81e-12 d.108.1.1 100698 2j8mA 172 6.35e-12 1yvoA 172 8.46e-12 d.108.1.1 124106 2fiaA 162 9.62e-12 d.108.1.1 133514 2i79A 172 1.28e-11 3c26A 266 1.57e-11 2fl4A 149 2.01e-11 d.108.1.1 133706 2ge3A 170 2.06e-11 d.108.1.1 135044 1z4eA 153 2.29e-11 d.108.1.1 124431 1u6mA 199 2.67e-11 d.108.1.1 113069 1ufhA 180 2.80e-11 d.108.1.1 88485 2q4vA 170 2.95e-11 d.108.1.1 139878 1on0A 158 3.92e-11 d.108.1.1 87095 2b5gA 171 4.83e-11 d.108.1.1 127892 1s3zA 165 5.14e-11 d.108.1.1 105250 2cy2A 174 5.45e-11 d.108.1.1 131016 2dxqA 150 6.22e-11 2r7hA 177 8.52e-11 1qsmA 152 9.53e-11 d.108.1.1 40808 1vkcA 158 1.11e-10 d.108.1.1 113663 2cntA 160 1.24e-10 2ae6A 166 1.29e-10 d.108.1.1 126600 1tiqA 180 1.32e-10 d.108.1.1 107010 2oh1A 179 1.34e-10 2euiA 153 1.46e-10 d.108.1.1 132387 1wwzA 159 1.53e-10 d.108.1.1 121380 1i1dA 161 2.17e-10 d.108.1.1 61526 1y9kA 157 2.18e-10 d.108.1.1 122779 1qsoA 149 2.30e-10 d.108.1.1 40812 2fe7A 166 2.40e-10 d.108.1.1 133325 1y7rA 133 2.78e-10 d.108.1.1 122716 2c27A 315 2.82e-10 d.108.1.1 129659 2i6cA 160 2.97e-10 d.108.1.1 137095 1i21A 159 2.99e-10 d.108.1.1 61549 1l0cA 207 3.13e-10 d.108.1.1 73393 2ob0A 170 3.45e-10 1p0hA 318 3.98e-10 d.108.1.1 93866 1i12A 160 5.77e-10 d.108.1.1 61515 1qstA 160 6.43e-10 d.108.1.1 40804 2q0yA 153 6.98e-10 1cjwA 166 7.68e-10 d.108.1.1 40818 1kuxA 207 7.73e-10 d.108.1.1 73021 1bo4A 168 9.93e-10 d.108.1.1 40798 1y9wA 140 1.12e-09 d.108.1.1 122783 2pc1A 201 1.21e-09 2prbA 196 1.33e-09 1q2yA 140 1.40e-09 d.108.1.1 95655 1yvkA 163 1.59e-09 d.108.1.1 124101 1yghA 164 1.87e-09 d.108.1.1 40802 1gheA 177 1.95e-09 d.108.1.1 76222 2reeA 224 2.30e-09 1xebA 150 3.14e-09 d.108.1.1 115219 2ganA 190 3.24e-09 d.108.1.1 134889 1b6bA 174 3.33e-09 d.108.1.1 40819 2aj6A 159 3.67e-09 d.108.1.1 126841 5gcnA 166 4.34e-09 d.108.1.1 40807 1n71A 180 4.60e-09 d.108.1.1 85370 2g3aA 152 6.10e-09 d.108.1.1 134557 3blnA 143 7.22e-09 1z4rA 168 7.94e-09 d.108.1.1 124444 2fiwA 172 9.37e-09 d.108.1.1 133539 2qecA 204 1.26e-08 2bswA 146 1.68e-08 d.108.1.1 129127 2jdcA 146 1.94e-08 1yx0A 159 2.09e-08 d.108.1.1 124168 2ozgA 396 2.30e-08 1b87A 181 3.05e-08 d.108.1.1 40797 1nslA 184 5.15e-08 d.108.1.1 86137 2ozhA 142 8.22e-08 2atrA 138 9.18e-08 d.108.1.1 127305 2a4nA 182 1.30e-07 d.108.1.1 126159 1m4iA 181 1.38e-07 d.108.1.1 74457 1yreA 197 1.61e-07 d.108.1.1 123919 2ft0A 235 1.91e-07 2fckA 181 2.03e-07 d.108.1.1 133272 2hv2A 400 3.00e-07 2qmlA 198 3.61e-07 1sqhA 312 4.74e-07 d.108.1.5 98966 2r98A 456 7.73e-07 2o28A 184 7.88e-07 2fsrA 195 9.06e-06 d.108.1.1 134036 1s7kA 182 9.56e-06 d.108.1.1 118878 2z10A 194 1.24e-05 2i00A 406 1.46e-05 1yk3A 210 0.003382 d.108.1.1 123493 2g0bA 198 0.006322 2q04A 211 0.02303 1bob 320 0.06872 1ro5A 201 0.08034 d.108.1.3 105023 1xmtA 103 0.08931 d.108.1.1 115561 1iicA 422 0.1161 d.108.1.2,d.108.1.2 62422,62423 1bobA 320 0.1246 d.108.1.1 40816 2p0wA 324 0.1674 1nmtA 392 0.1722 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 0.7797 2givA 295 2.807 d.108.1.1 135253 1yleA 342 7.911 d.108.1.8 123647 2du2A 374 11.07 1qo8A 566 15.43 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2a6mA 155 15.99 d.58.57.1 126287 2f9sA 151 17.68 c.47.1.10 133168 2f5gA 133 17.85 d.58.57.1 132991 2pd8A 149 18.45 1fy7A 278 19.62 d.108.1.1 40817 1kzfA 230 22.02 d.108.1.3 73354 2pdrA 149 22.18 2hqyA 305 23.46 1jmvA 141 24.25 c.26.2.4 66897 2fyxA 143 24.77 d.58.57.1 134411 2qh8A 302 26.07 2d4pA 141 31.72 1vr9A 213 33.38 d.37.1.1,d.37.1.1 120446,120447 2uv4A 152 35.63 1ewjA 126 40.76 d.32.1.2 59526 1g97A 459 41.40 b.81.1.4,c.68.1.5 60394,60395 1mejA 223 42.70 c.65.1.1 79029 2ef7A 133 46.62 1tq8A 163 52.23 c.26.2.4 107204 1ecsA 126 55.46 d.32.1.2 59407 1st9A 143 57.14 c.47.1.10 98987 1uehA 253 57.75 c.101.1.1 99259 2r0yA 311 57.77 1p2hA 571 58.09 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2vjvA 159 62.18 1mkzA 172 62.93 c.57.1.1 84998 1svjA 156 67.18 d.220.1.1 106049 2cmxA 118 69.42 2vqcA 118 69.42 2nliA 368 71.16 2bkrA 212 73.83 d.3.1.7 128710 2p67A 341 74.34 2ae0X 345 84.13 1y0pA 571 84.36 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2hxwA 237 87.15 1meoA 209 88.21 c.65.1.1 79035 1pvmA 184 89.02 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1p0zA 131 89.46 d.110.6.1 93882