# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.85e-13 d.108.1.1 84979 1yr0A 175 3.45e-12 d.108.1.1 123905 2pdoA 144 3.97e-12 1vhsA 175 6.58e-12 d.108.1.1 100698 1yvoA 172 6.88e-12 d.108.1.1 124106 2j8mA 172 7.24e-12 2fiaA 162 8.45e-12 d.108.1.1 133514 3c26A 266 1.03e-11 2i79A 172 1.06e-11 2fl4A 149 1.52e-11 d.108.1.1 133706 2ge3A 170 1.60e-11 d.108.1.1 135044 1u6mA 199 1.62e-11 d.108.1.1 113069 1z4eA 153 1.92e-11 d.108.1.1 124431 1ufhA 180 2.24e-11 d.108.1.1 88485 2q4vA 170 3.61e-11 d.108.1.1 139878 1on0A 158 4.31e-11 d.108.1.1 87095 2cy2A 174 4.58e-11 d.108.1.1 131016 1s3zA 165 5.52e-11 d.108.1.1 105250 2r7hA 177 6.69e-11 1wwzA 159 6.70e-11 d.108.1.1 121380 1qsmA 152 7.92e-11 d.108.1.1 40808 1tiqA 180 8.09e-11 d.108.1.1 107010 2dxqA 150 8.16e-11 2oh1A 179 1.01e-10 2cntA 160 1.09e-10 1vkcA 158 1.09e-10 d.108.1.1 113663 2ae6A 166 1.21e-10 d.108.1.1 126600 2euiA 153 1.32e-10 d.108.1.1 132387 2b5gA 171 1.34e-10 d.108.1.1 127892 2fe7A 166 1.39e-10 d.108.1.1 133325 2i6cA 160 2.24e-10 d.108.1.1 137095 1qsoA 149 2.35e-10 d.108.1.1 40812 2ob0A 170 2.72e-10 2c27A 315 2.74e-10 d.108.1.1 129659 1p0hA 318 3.92e-10 d.108.1.1 93866 1l0cA 207 4.79e-10 d.108.1.1 73393 1qstA 160 5.16e-10 d.108.1.1 40804 1i1dA 161 5.20e-10 d.108.1.1 61526 1y7rA 133 5.22e-10 d.108.1.1 122716 2q0yA 153 7.00e-10 1i21A 159 7.01e-10 d.108.1.1 61549 1kuxA 207 7.39e-10 d.108.1.1 73021 1cjwA 166 8.16e-10 d.108.1.1 40818 2prbA 196 9.54e-10 1gheA 177 9.67e-10 d.108.1.1 76222 1bo4A 168 9.84e-10 d.108.1.1 40798 1y9kA 157 1.02e-09 d.108.1.1 122779 1y9wA 140 1.12e-09 d.108.1.1 122783 2pc1A 201 1.13e-09 1q2yA 140 1.15e-09 d.108.1.1 95655 1i12A 160 1.51e-09 d.108.1.1 61515 1yvkA 163 1.73e-09 d.108.1.1 124101 1yghA 164 2.00e-09 d.108.1.1 40802 1b6bA 174 2.28e-09 d.108.1.1 40819 5gcnA 166 2.37e-09 d.108.1.1 40807 2reeA 224 2.55e-09 2ganA 190 3.94e-09 d.108.1.1 134889 2aj6A 159 4.18e-09 d.108.1.1 126841 1xebA 150 4.63e-09 d.108.1.1 115219 1n71A 180 4.66e-09 d.108.1.1 85370 3blnA 143 5.69e-09 1z4rA 168 6.14e-09 d.108.1.1 124444 2g3aA 152 6.22e-09 d.108.1.1 134557 2fiwA 172 7.63e-09 d.108.1.1 133539 2qecA 204 1.10e-08 1yx0A 159 1.42e-08 d.108.1.1 124168 2bswA 146 1.57e-08 d.108.1.1 129127 2ozgA 396 1.66e-08 2jdcA 146 2.64e-08 1b87A 181 2.94e-08 d.108.1.1 40797 1nslA 184 2.95e-08 d.108.1.1 86137 1yreA 197 5.91e-08 d.108.1.1 123919 2ozhA 142 8.45e-08 2atrA 138 8.58e-08 d.108.1.1 127305 2a4nA 182 1.01e-07 d.108.1.1 126159 2fckA 181 1.12e-07 d.108.1.1 133272 1m4iA 181 1.52e-07 d.108.1.1 74457 2qmlA 198 2.31e-07 2ft0A 235 2.86e-07 1sqhA 312 3.55e-07 d.108.1.5 98966 2hv2A 400 4.19e-07 2o28A 184 6.40e-07 2r98A 456 6.93e-07 2fsrA 195 4.28e-06 d.108.1.1 134036 2z10A 194 4.95e-06 1s7kA 182 7.66e-06 d.108.1.1 118878 2i00A 406 3.32e-05 1yk3A 210 0.001397 d.108.1.1 123493 2g0bA 198 0.006370 2q04A 211 0.01651 1bob 320 0.05047 1ro5A 201 0.06128 d.108.1.3 105023 1bobA 320 0.1089 d.108.1.1 40816 1xmtA 103 0.1225 d.108.1.1 115561 1iicA 422 0.1262 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.1596 1nmtA 392 0.2198 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.280 1yleA 342 5.011 d.108.1.8 123647 2givA 295 5.843 d.108.1.1 135253 2du2A 374 10.75 2hqyA 305 13.29 2a6mA 155 13.61 d.58.57.1 126287 2f9sA 151 13.64 c.47.1.10 133168 2yu6A 141 15.58 1kzfA 230 16.15 d.108.1.3 73354 2fyxA 143 16.43 d.58.57.1 134411 2f5gA 133 17.57 d.58.57.1 132991 2pdrA 149 19.79 1vr9A 213 25.30 d.37.1.1,d.37.1.1 120446,120447 2qh8A 302 27.04 2d4pA 141 28.67 1ewjA 126 29.03 d.32.1.2 59526 1mejA 223 31.76 c.65.1.1 79029 2uv4A 152 32.73 1svjA 156 32.85 d.220.1.1 106049 1qo8A 566 40.79 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2vjvA 159 43.64 1fy7A 278 44.04 d.108.1.1 40817 2pd8A 149 45.45 2ef7A 133 48.06 1p2hA 571 49.20 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1st9A 143 50.46 c.47.1.10 98987 2r0yA 311 55.94 1ecsA 126 57.63 d.32.1.2 59407 1uehA 253 60.22 c.101.1.1 99259 2yzqA 282 60.92 1g97A 459 62.19 b.81.1.4,c.68.1.5 60394,60395 1jmvA 141 62.31 c.26.2.4 66897 3cbtA 237 63.31 2yziA 138 63.81 1ta9A 450 64.02 1pzsA 208 66.01 b.1.8.1 104397 2arfA 165 66.52 1tq8A 163 66.55 c.26.2.4 107204 2ariA 39 66.79 2vhhA 405 67.10 2oh5A 248 69.14 1p0zA 131 69.62 d.110.6.1 93882 2a8eA 220 70.42 d.296.1.1 126397 1ss4A 153 71.21 d.32.1.6 105976 2hxwA 237 72.92 2iafA 151 74.63 d.81.2.1 137157 1to4A 156 75.44 b.1.8.1 107162 1lj1A 571 79.00 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1xkfA 133 79.94 d.37.1.1,d.37.1.1 122077,122078 1bia 321 81.01 2cmxA 118 82.28 2vqcA 118 82.28 1y0pA 571 88.63 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1meoA 209 88.82 c.65.1.1 79035