# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 1.86e-13 d.108.1.1 84979 2pdoA 144 9.75e-13 1yr0A 175 1.18e-12 d.108.1.1 123905 1yvoA 172 2.85e-12 d.108.1.1 124106 1vhsA 175 3.36e-12 d.108.1.1 100698 2j8mA 172 4.11e-12 2fiaA 162 4.44e-12 d.108.1.1 133514 3c26A 266 4.50e-12 2i79A 172 4.61e-12 2ge3A 170 6.41e-12 d.108.1.1 135044 1u6mA 199 6.66e-12 d.108.1.1 113069 1z4eA 153 7.60e-12 d.108.1.1 124431 1tiqA 180 8.78e-12 d.108.1.1 107010 1ufhA 180 1.17e-11 d.108.1.1 88485 2fl4A 149 1.29e-11 d.108.1.1 133706 2q4vA 170 1.67e-11 d.108.1.1 139878 1s3zA 165 1.72e-11 d.108.1.1 105250 1on0A 158 1.91e-11 d.108.1.1 87095 2r7hA 177 2.20e-11 2ae6A 166 3.49e-11 d.108.1.1 126600 2cy2A 174 3.66e-11 d.108.1.1 131016 2oh1A 179 3.85e-11 2b5gA 171 3.86e-11 d.108.1.1 127892 1wwzA 159 4.21e-11 d.108.1.1 121380 2cntA 160 4.42e-11 2dxqA 150 4.47e-11 1qsmA 152 5.96e-11 d.108.1.1 40808 2fe7A 166 6.68e-11 d.108.1.1 133325 1y9kA 157 8.78e-11 d.108.1.1 122779 2euiA 153 8.96e-11 d.108.1.1 132387 2ob0A 170 1.01e-10 2i6cA 160 1.07e-10 d.108.1.1 137095 1vkcA 158 1.15e-10 d.108.1.1 113663 1qsoA 149 1.43e-10 d.108.1.1 40812 1i21A 159 1.63e-10 d.108.1.1 61549 1i1dA 161 1.93e-10 d.108.1.1 61526 2c27A 315 1.97e-10 d.108.1.1 129659 1yvkA 163 2.08e-10 d.108.1.1 124101 1y7rA 133 2.20e-10 d.108.1.1 122716 1l0cA 207 2.39e-10 d.108.1.1 73393 2q0yA 153 2.64e-10 1i12A 160 2.80e-10 d.108.1.1 61515 1p0hA 318 3.14e-10 d.108.1.1 93866 1bo4A 168 3.83e-10 d.108.1.1 40798 1kuxA 207 4.06e-10 d.108.1.1 73021 2aj6A 159 4.36e-10 d.108.1.1 126841 5gcnA 166 4.52e-10 d.108.1.1 40807 1y9wA 140 4.76e-10 d.108.1.1 122783 1qstA 160 4.86e-10 d.108.1.1 40804 1cjwA 166 5.29e-10 d.108.1.1 40818 2prbA 196 5.73e-10 1gheA 177 5.78e-10 d.108.1.1 76222 1q2yA 140 6.38e-10 d.108.1.1 95655 2pc1A 201 9.46e-10 1z4rA 168 1.07e-09 d.108.1.1 124444 1yghA 164 1.28e-09 d.108.1.1 40802 1b6bA 174 1.44e-09 d.108.1.1 40819 2fiwA 172 1.69e-09 d.108.1.1 133539 2reeA 224 1.74e-09 1n71A 180 1.79e-09 d.108.1.1 85370 1xebA 150 2.23e-09 d.108.1.1 115219 3blnA 143 2.38e-09 2qecA 204 3.61e-09 2g3aA 152 3.63e-09 d.108.1.1 134557 1yx0A 159 4.16e-09 d.108.1.1 124168 2ganA 190 5.15e-09 d.108.1.1 134889 1b87A 181 7.81e-09 d.108.1.1 40797 2ozgA 396 1.06e-08 2atrA 138 1.07e-08 d.108.1.1 127305 2bswA 146 1.10e-08 d.108.1.1 129127 2jdcA 146 1.79e-08 1nslA 184 1.95e-08 d.108.1.1 86137 2a4nA 182 3.00e-08 d.108.1.1 126159 2ozhA 142 3.30e-08 1m4iA 181 6.38e-08 d.108.1.1 74457 2qmlA 198 7.22e-08 2fckA 181 7.36e-08 d.108.1.1 133272 2ft0A 235 9.42e-08 2hv2A 400 1.21e-07 1yreA 197 1.54e-07 d.108.1.1 123919 1sqhA 312 1.83e-07 d.108.1.5 98966 2r98A 456 2.25e-07 2o28A 184 2.61e-07 2fsrA 195 1.89e-06 d.108.1.1 134036 2z10A 194 5.36e-06 1s7kA 182 5.44e-06 d.108.1.1 118878 2i00A 406 5.48e-06 1yk3A 210 0.000794 d.108.1.1 123493 2g0bA 198 0.001563 2q04A 211 0.01047 1ro5A 201 0.01966 d.108.1.3 105023 1iicA 422 0.04945 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.06312 d.108.1.1 115561 1bob 320 0.06502 1nmtA 392 0.1057 d.108.1.2,d.108.1.2 40823,40824 2p0wA 324 0.1685 1bobA 320 0.2946 d.108.1.1 40816 2pq8A 278 0.9179 1kzfA 230 3.477 d.108.1.3 73354 2givA 295 3.688 d.108.1.1 135253 1yleA 342 4.336 d.108.1.8 123647 2f9sA 151 7.362 c.47.1.10 133168 2d4pA 141 9.831 2du2A 374 12.58 2uv4A 152 13.71 1ewjA 126 13.85 d.32.1.2 59526 1vr9A 213 14.29 d.37.1.1,d.37.1.1 120446,120447 2ef7A 133 15.58 2f5gA 133 17.03 d.58.57.1 132991 1iukA 140 19.92 c.2.1.8 83712 2qh8A 302 20.12 1qo8A 566 20.13 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1tq8A 163 20.74 c.26.2.4 107204 1xkfA 133 21.13 d.37.1.1,d.37.1.1 122077,122078 2pd8A 149 23.40 1g97A 459 23.77 b.81.1.4,c.68.1.5 60394,60395 1st9A 143 24.47 c.47.1.10 98987 2hqyA 305 25.34 2fyxA 143 27.31 d.58.57.1 134411 1ecsA 126 27.59 d.32.1.2 59407 1p2hA 571 32.35 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1y81A 138 34.25 c.2.1.8 122731 2nliA 368 35.77 1wkbA 810 36.28 1zfjA 491 37.84 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ne9A 335 39.29 d.108.1.4,d.108.1.4 91839,91840 2zadA 345 39.72 2yziA 138 39.76 2pdrA 149 40.69 2yu6A 141 41.24 1uehA 253 41.34 c.101.1.1 99259 1y0pA 571 42.63 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2a6mA 155 42.85 d.58.57.1 126287 2arfA 165 45.50 1p0zA 131 47.37 d.110.6.1 93882 1qysA 106 47.88 k.41.1.1 96603 1o50A 157 48.45 d.37.1.1,d.37.1.1 92478,92479 2bonA 332 51.27 1lj1A 571 51.32 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1fy7A 278 52.40 d.108.1.1 40817 1goxA 369 53.47 c.1.4.1 28607 1svjA 156 53.69 d.220.1.1 106049 1ta9A 450 53.95 1wqjB 80 59.15 1ss4A 153 60.22 d.32.1.6 105976 2yzqA 282 60.42 1fxoA 293 61.02 c.68.1.6 34524 3ce9A 354 62.00 2nycA 144 63.22 d.37.1.1 138812 2vg2A 284 64.39 2vg0A 227 64.94 2vg3A 284 65.72 2vjvA 159 65.77 2q2kA 70 66.29 1tkjA 284 68.16 c.56.5.4 119296 2nzlA 392 69.45 1pzsA 208 71.75 b.1.8.1 104397 2ftxB 64 73.70 d.300.1.2 134086 2vhhA 405 75.53 1bywA 110 76.35 d.110.3.6 40912 1trb 320 76.48 2oh5A 248 77.56 2hxwA 237 78.01 2p9mA 138 78.28 1jnuA 104 78.39 d.110.3.6 71762 1p4cA 380 79.18 c.1.4.1 94100 2rduA 387 82.05 2g4rA 160 82.55 2p67A 341 85.12 2cmxA 118 86.05 2vqcA 118 86.05 1emsA 440 86.31 d.13.1.1,d.160.1.1 37520,42086 2iafA 151 87.26 d.81.2.1 137157