# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 7.83e-14 d.108.1.1 84979 2pdoA 144 2.97e-13 1yr0A 175 8.53e-13 d.108.1.1 123905 2j8mA 172 1.05e-12 3c26A 266 1.33e-12 2fiaA 162 1.87e-12 d.108.1.1 133514 1vhsA 175 1.87e-12 d.108.1.1 100698 1z4eA 153 2.68e-12 d.108.1.1 124431 2fl4A 149 2.69e-12 d.108.1.1 133706 1yvoA 172 3.31e-12 d.108.1.1 124106 1on0A 158 3.55e-12 d.108.1.1 87095 1u6mA 199 3.97e-12 d.108.1.1 113069 2q4vA 170 3.98e-12 d.108.1.1 139878 2i79A 172 5.00e-12 1s3zA 165 5.39e-12 d.108.1.1 105250 1ufhA 180 6.28e-12 d.108.1.1 88485 2ge3A 170 9.91e-12 d.108.1.1 135044 2cy2A 174 1.05e-11 d.108.1.1 131016 2r7hA 177 1.07e-11 2dxqA 150 1.14e-11 2b5gA 171 1.20e-11 d.108.1.1 127892 2cntA 160 1.33e-11 1vkcA 158 1.36e-11 d.108.1.1 113663 1tiqA 180 1.45e-11 d.108.1.1 107010 1wwzA 159 1.51e-11 d.108.1.1 121380 1qsmA 152 1.58e-11 d.108.1.1 40808 1y9kA 157 1.97e-11 d.108.1.1 122779 2ae6A 166 1.98e-11 d.108.1.1 126600 2c27A 315 3.13e-11 d.108.1.1 129659 2ob0A 170 3.70e-11 2i6cA 160 3.78e-11 d.108.1.1 137095 2fe7A 166 4.13e-11 d.108.1.1 133325 2oh1A 179 4.24e-11 1y7rA 133 4.27e-11 d.108.1.1 122716 2euiA 153 4.66e-11 d.108.1.1 132387 1i1dA 161 4.85e-11 d.108.1.1 61526 1i21A 159 5.92e-11 d.108.1.1 61549 1qsoA 149 6.02e-11 d.108.1.1 40812 1qstA 160 8.05e-11 d.108.1.1 40804 1l0cA 207 1.01e-10 d.108.1.1 73393 1y9wA 140 1.16e-10 d.108.1.1 122783 1i12A 160 1.34e-10 d.108.1.1 61515 1p0hA 318 1.40e-10 d.108.1.1 93866 1yvkA 163 1.45e-10 d.108.1.1 124101 2q0yA 153 1.46e-10 1cjwA 166 1.63e-10 d.108.1.1 40818 1kuxA 207 1.79e-10 d.108.1.1 73021 1q2yA 140 1.99e-10 d.108.1.1 95655 1yghA 164 2.20e-10 d.108.1.1 40802 2prbA 196 2.33e-10 1bo4A 168 2.36e-10 d.108.1.1 40798 2pc1A 201 2.82e-10 2aj6A 159 3.29e-10 d.108.1.1 126841 2reeA 224 4.48e-10 1gheA 177 5.21e-10 d.108.1.1 76222 5gcnA 166 5.67e-10 d.108.1.1 40807 3blnA 143 6.56e-10 1n71A 180 7.07e-10 d.108.1.1 85370 1xebA 150 7.38e-10 d.108.1.1 115219 1b6bA 174 7.72e-10 d.108.1.1 40819 2ganA 190 8.03e-10 d.108.1.1 134889 1z4rA 168 8.20e-10 d.108.1.1 124444 2g3aA 152 1.25e-09 d.108.1.1 134557 2qecA 204 1.63e-09 1yx0A 159 2.18e-09 d.108.1.1 124168 2bswA 146 3.09e-09 d.108.1.1 129127 1b87A 181 3.43e-09 d.108.1.1 40797 2ozgA 396 4.52e-09 1yreA 197 5.11e-09 d.108.1.1 123919 2fiwA 172 5.49e-09 d.108.1.1 133539 2jdcA 146 6.41e-09 2atrA 138 8.84e-09 d.108.1.1 127305 1nslA 184 1.25e-08 d.108.1.1 86137 2ozhA 142 1.47e-08 2a4nA 182 2.30e-08 d.108.1.1 126159 2qmlA 198 3.34e-08 2fckA 181 3.59e-08 d.108.1.1 133272 1m4iA 181 3.72e-08 d.108.1.1 74457 2ft0A 235 7.16e-08 1sqhA 312 9.00e-08 d.108.1.5 98966 2hv2A 400 9.80e-08 2r98A 456 2.90e-07 2o28A 184 3.46e-07 2fsrA 195 1.19e-06 d.108.1.1 134036 1s7kA 182 2.73e-06 d.108.1.1 118878 2z10A 194 3.65e-06 2i00A 406 5.25e-06 1yk3A 210 0.000935 d.108.1.1 123493 2g0bA 198 0.004584 2q04A 211 0.006738 1ro5A 201 0.05036 d.108.1.3 105023 1xmtA 103 0.05067 d.108.1.1 115561 1bob 320 0.05297 1iicA 422 0.07791 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.1217 1bobA 320 0.1226 d.108.1.1 40816 1nmtA 392 0.1704 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.057 2givA 295 5.538 d.108.1.1 135253 2du2A 374 9.499 2pd8A 149 12.67 2hqyA 305 13.35 2a6mA 155 13.40 d.58.57.1 126287 2f9sA 151 13.95 c.47.1.10 133168 1jmvA 141 14.87 c.26.2.4 66897 2pdrA 149 15.44 2fyxA 143 15.81 d.58.57.1 134411 1qo8A 566 15.98 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2f5gA 133 16.28 d.58.57.1 132991 2r0yA 311 17.37 1kzfA 230 20.63 d.108.1.3 73354 1yleA 342 22.16 d.108.1.8 123647 1vr9A 213 22.53 d.37.1.1,d.37.1.1 120446,120447 1ewjA 126 23.76 d.32.1.2 59526 2ef7A 133 24.78 1pvmA 184 25.14 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2uv4A 152 25.70 1xkfA 133 28.88 d.37.1.1,d.37.1.1 122077,122078 1svjA 156 30.66 d.220.1.1 106049 2qh8A 302 31.42 2yu6A 141 32.53 2d4pA 141 32.54 1fy7A 278 33.15 d.108.1.1 40817 2hxwA 237 36.85 1st9A 143 39.09 c.47.1.10 98987 1wqjB 80 43.84 2bkrA 212 43.92 d.3.1.7 128710 1wkbA 810 43.92 2cxcA 144 45.51 1ecsA 126 48.20 d.32.1.2 59407 2yzqA 282 49.55 2pkfA 334 50.07 2vqcA 118 50.68 1uehA 253 50.79 c.101.1.1 99259 2cmxA 118 51.72 2p67A 341 52.78 1mejA 223 53.69 c.65.1.1 79029 1goxA 369 54.23 c.1.4.1 28607 2px7A 236 55.57 2yziA 138 55.60 2abqA 306 56.48 c.72.1.1 126528 1y0pA 571 58.26 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2ariA 39 60.06 2iafA 151 61.26 d.81.2.1 137157 1tq8A 163 65.31 c.26.2.4 107204 2ftxB 64 67.48 d.300.1.2 134086 2cxaA 256 68.07 d.108.1.6 130993 2gaeA 346 68.35 2vjvA 159 69.17 1v0wA 506 69.34 d.136.1.2,d.136.1.2 108220,108221 2qqzA 126 69.92 2nliA 368 71.38 3stdA 165 72.14 d.17.4.1 38073 1pzsA 208 72.49 b.1.8.1 104397 1qysA 106 74.82 k.41.1.1 96603 2vg0A 227 78.15 1ka9H 200 79.39 c.23.16.1 77308 2d9bA 109 81.42 1g97A 459 82.90 b.81.1.4,c.68.1.5 60394,60395 2iqjA 134 83.71 1o50A 157 83.73 d.37.1.1,d.37.1.1 92478,92479 2bf6A 449 84.07 1bywA 110 87.76 d.110.3.6 40912 1kngA 156 88.85 c.47.1.10 72777 2h88A 621 89.38