# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 4.57e-14 d.108.1.1 84979 2pdoA 144 2.06e-13 2j8mA 172 4.63e-13 1yr0A 175 5.50e-13 d.108.1.1 123905 3c26A 266 1.08e-12 2fiaA 162 1.12e-12 d.108.1.1 133514 2fl4A 149 1.50e-12 d.108.1.1 133706 1yvoA 172 1.56e-12 d.108.1.1 124106 1z4eA 153 1.58e-12 d.108.1.1 124431 1vhsA 175 1.85e-12 d.108.1.1 100698 2q4vA 170 2.21e-12 d.108.1.1 139878 1u6mA 199 2.79e-12 d.108.1.1 113069 1ufhA 180 3.87e-12 d.108.1.1 88485 1on0A 158 3.87e-12 d.108.1.1 87095 1s3zA 165 4.02e-12 d.108.1.1 105250 2i79A 172 4.35e-12 2ge3A 170 5.20e-12 d.108.1.1 135044 2cy2A 174 5.38e-12 d.108.1.1 131016 2b5gA 171 5.91e-12 d.108.1.1 127892 2r7hA 177 6.16e-12 2dxqA 150 8.03e-12 1qsmA 152 9.24e-12 d.108.1.1 40808 1wwzA 159 9.64e-12 d.108.1.1 121380 1vkcA 158 9.97e-12 d.108.1.1 113663 2cntA 160 1.05e-11 2ae6A 166 1.51e-11 d.108.1.1 126600 2c27A 315 1.60e-11 d.108.1.1 129659 1y9kA 157 1.80e-11 d.108.1.1 122779 1tiqA 180 1.90e-11 d.108.1.1 107010 2oh1A 179 1.96e-11 2euiA 153 2.13e-11 d.108.1.1 132387 2i6cA 160 2.56e-11 d.108.1.1 137095 2ob0A 170 2.67e-11 1i1dA 161 2.76e-11 d.108.1.1 61526 2fe7A 166 3.01e-11 d.108.1.1 133325 1y7rA 133 3.23e-11 d.108.1.1 122716 1i21A 159 3.25e-11 d.108.1.1 61549 1qsoA 149 3.60e-11 d.108.1.1 40812 1qstA 160 6.06e-11 d.108.1.1 40804 1l0cA 207 6.24e-11 d.108.1.1 73393 1y9wA 140 7.79e-11 d.108.1.1 122783 1i12A 160 8.03e-11 d.108.1.1 61515 1p0hA 318 8.33e-11 d.108.1.1 93866 1cjwA 166 8.90e-11 d.108.1.1 40818 2q0yA 153 9.52e-11 1kuxA 207 1.04e-10 d.108.1.1 73021 2pc1A 201 1.38e-10 1yghA 164 1.53e-10 d.108.1.1 40802 1yvkA 163 1.56e-10 d.108.1.1 124101 1bo4A 168 1.65e-10 d.108.1.1 40798 1q2yA 140 1.76e-10 d.108.1.1 95655 2prbA 196 1.79e-10 2reeA 224 2.46e-10 2aj6A 159 2.86e-10 d.108.1.1 126841 5gcnA 166 3.08e-10 d.108.1.1 40807 1gheA 177 3.12e-10 d.108.1.1 76222 1n71A 180 4.15e-10 d.108.1.1 85370 1xebA 150 5.43e-10 d.108.1.1 115219 3blnA 143 5.72e-10 2ganA 190 6.21e-10 d.108.1.1 134889 1z4rA 168 6.27e-10 d.108.1.1 124444 1b6bA 174 6.59e-10 d.108.1.1 40819 2qecA 204 9.99e-10 2g3aA 152 1.09e-09 d.108.1.1 134557 1yx0A 159 1.36e-09 d.108.1.1 124168 1b87A 181 2.02e-09 d.108.1.1 40797 2bswA 146 2.28e-09 d.108.1.1 129127 2ozgA 396 2.56e-09 2fiwA 172 3.16e-09 d.108.1.1 133539 2jdcA 146 4.21e-09 1yreA 197 5.26e-09 d.108.1.1 123919 1nslA 184 8.55e-09 d.108.1.1 86137 2atrA 138 9.21e-09 d.108.1.1 127305 2ozhA 142 1.23e-08 1m4iA 181 2.23e-08 d.108.1.1 74457 2a4nA 182 2.37e-08 d.108.1.1 126159 2fckA 181 2.70e-08 d.108.1.1 133272 2qmlA 198 2.90e-08 1sqhA 312 5.69e-08 d.108.1.5 98966 2ft0A 235 6.39e-08 2hv2A 400 8.22e-08 2r98A 456 2.32e-07 2o28A 184 3.14e-07 2fsrA 195 1.28e-06 d.108.1.1 134036 1s7kA 182 2.33e-06 d.108.1.1 118878 2z10A 194 2.77e-06 2i00A 406 4.53e-06 1yk3A 210 0.000807 d.108.1.1 123493 2g0bA 198 0.003398 2q04A 211 0.006612 1xmtA 103 0.05039 d.108.1.1 115561 1bob 320 0.05929 1ro5A 201 0.06578 d.108.1.3 105023 1iicA 422 0.09787 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.1006 1bobA 320 0.1016 d.108.1.1 40816 1nmtA 392 0.2307 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.119 2givA 295 4.508 d.108.1.1 135253 2du2A 374 5.881 2f9sA 151 9.162 c.47.1.10 133168 1jmvA 141 12.53 c.26.2.4 66897 2a6mA 155 13.52 d.58.57.1 126287 2hqyA 305 13.97 2f5gA 133 16.45 d.58.57.1 132991 2fyxA 143 17.92 d.58.57.1 134411 2r0yA 311 19.72 1qo8A 566 20.63 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1mejA 223 22.81 c.65.1.1 79029 2pdrA 149 24.07 2hxwA 237 27.96 2pd8A 149 28.61 1st9A 143 29.83 c.47.1.10 98987 2qh8A 302 29.93 1kzfA 230 30.18 d.108.1.3 73354 2gaeA 346 30.82 1ewjA 126 31.20 d.32.1.2 59526 1svjA 156 32.32 d.220.1.1 106049 1yleA 342 32.64 d.108.1.8 123647 2uv4A 152 33.09 2ef7A 133 33.32 1vr9A 213 35.43 d.37.1.1,d.37.1.1 120446,120447 1fy7A 278 40.21 d.108.1.1 40817 1wqjB 80 40.63 2bkrA 212 41.35 d.3.1.7 128710 2d4pA 141 42.39 1ecsA 126 43.08 d.32.1.2 59407 1pvmA 184 44.84 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2yu6A 141 45.81 1tq8A 163 48.20 c.26.2.4 107204 1xkfA 133 51.04 d.37.1.1,d.37.1.1 122077,122078 2ae0X 345 51.70 2p67A 341 52.11 2ariA 39 52.33 1meoA 209 53.08 c.65.1.1 79035 1wkbA 810 55.51 2abqA 306 58.91 c.72.1.1 126528 1v0wA 506 62.72 d.136.1.2,d.136.1.2 108220,108221 1uehA 253 63.16 c.101.1.1 99259 2yzqA 282 63.57 2ftxB 64 64.87 d.300.1.2 134086 2vqcA 118 66.27 1jkxA 212 66.77 c.65.1.1 66813 2cmxA 118 67.20 2px7A 236 67.98 2vjvA 159 72.48 1qysA 106 73.76 k.41.1.1 96603 1y0pA 571 74.09 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1goxA 369 76.65 c.1.4.1 28607 1kngA 156 80.72 c.47.1.10 72777 1mkzA 172 80.81 c.57.1.1 84998 2yxxA 386 81.65 2a8eA 220 81.90 d.296.1.1 126397 1zzoA 136 84.61 c.47.1.10 125913 2pkfA 334 85.54 2nliA 368 85.79 2yziA 138 89.04