# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.38e-13 d.108.1.1 84979 2pdoA 144 9.09e-13 2j8mA 172 2.54e-12 1yr0A 175 2.70e-12 d.108.1.1 123905 3c26A 266 4.63e-12 2fiaA 162 5.28e-12 d.108.1.1 133514 1vhsA 175 6.16e-12 d.108.1.1 100698 1z4eA 153 6.22e-12 d.108.1.1 124431 2fl4A 149 7.37e-12 d.108.1.1 133706 1yvoA 172 8.91e-12 d.108.1.1 124106 2q4vA 170 9.91e-12 d.108.1.1 139878 1u6mA 199 1.10e-11 d.108.1.1 113069 1ufhA 180 1.38e-11 d.108.1.1 88485 2i79A 172 1.40e-11 1on0A 158 1.51e-11 d.108.1.1 87095 1s3zA 165 2.03e-11 d.108.1.1 105250 2ge3A 170 2.19e-11 d.108.1.1 135044 2b5gA 171 2.23e-11 d.108.1.1 127892 2cy2A 174 2.59e-11 d.108.1.1 131016 2r7hA 177 2.59e-11 2dxqA 150 2.61e-11 1wwzA 159 2.89e-11 d.108.1.1 121380 1vkcA 158 3.61e-11 d.108.1.1 113663 1qsmA 152 3.67e-11 d.108.1.1 40808 2cntA 160 3.96e-11 2ae6A 166 6.15e-11 d.108.1.1 126600 1tiqA 180 6.22e-11 d.108.1.1 107010 2c27A 315 6.79e-11 d.108.1.1 129659 2oh1A 179 7.47e-11 1y9kA 157 8.54e-11 d.108.1.1 122779 2fe7A 166 8.88e-11 d.108.1.1 133325 2euiA 153 9.03e-11 d.108.1.1 132387 2i6cA 160 9.72e-11 d.108.1.1 137095 2ob0A 170 1.02e-10 1y7rA 133 1.04e-10 d.108.1.1 122716 1i1dA 161 1.07e-10 d.108.1.1 61526 1qsoA 149 1.24e-10 d.108.1.1 40812 1i21A 159 1.32e-10 d.108.1.1 61549 1qstA 160 2.33e-10 d.108.1.1 40804 1l0cA 207 2.50e-10 d.108.1.1 73393 1i12A 160 2.75e-10 d.108.1.1 61515 1y9wA 140 2.85e-10 d.108.1.1 122783 1p0hA 318 2.94e-10 d.108.1.1 93866 1cjwA 166 3.49e-10 d.108.1.1 40818 2q0yA 153 3.78e-10 1kuxA 207 4.04e-10 d.108.1.1 73021 1yvkA 163 4.42e-10 d.108.1.1 124101 2pc1A 201 4.52e-10 2prbA 196 4.90e-10 1bo4A 168 5.65e-10 d.108.1.1 40798 1q2yA 140 5.87e-10 d.108.1.1 95655 1yghA 164 6.19e-10 d.108.1.1 40802 2aj6A 159 8.41e-10 d.108.1.1 126841 2reeA 224 8.46e-10 5gcnA 166 1.13e-09 d.108.1.1 40807 1gheA 177 1.14e-09 d.108.1.1 76222 1n71A 180 1.24e-09 d.108.1.1 85370 1xebA 150 1.53e-09 d.108.1.1 115219 3blnA 143 1.57e-09 2ganA 190 1.62e-09 d.108.1.1 134889 1b6bA 174 1.87e-09 d.108.1.1 40819 1z4rA 168 2.13e-09 d.108.1.1 124444 2qecA 204 3.85e-09 1yx0A 159 3.92e-09 d.108.1.1 124168 2g3aA 152 4.10e-09 d.108.1.1 134557 1b87A 181 6.65e-09 d.108.1.1 40797 2bswA 146 6.86e-09 d.108.1.1 129127 2ozgA 396 7.14e-09 2fiwA 172 7.89e-09 d.108.1.1 133539 1yreA 197 1.03e-08 d.108.1.1 123919 2jdcA 146 1.27e-08 2atrA 138 2.10e-08 d.108.1.1 127305 1nslA 184 2.59e-08 d.108.1.1 86137 2ozhA 142 3.39e-08 1m4iA 181 4.92e-08 d.108.1.1 74457 2qmlA 198 5.92e-08 2a4nA 182 6.23e-08 d.108.1.1 126159 2fckA 181 9.94e-08 d.108.1.1 133272 1sqhA 312 1.22e-07 d.108.1.5 98966 2hv2A 400 1.37e-07 2ft0A 235 1.46e-07 2r98A 456 4.47e-07 2o28A 184 7.19e-07 2fsrA 195 2.43e-06 d.108.1.1 134036 1s7kA 182 5.25e-06 d.108.1.1 118878 2z10A 194 7.09e-06 2i00A 406 7.33e-06 1yk3A 210 0.000811 d.108.1.1 123493 2g0bA 198 0.005279 2q04A 211 0.009704 1ro5A 201 0.05994 d.108.1.3 105023 1xmtA 103 0.06862 d.108.1.1 115561 1bob 320 0.07017 1iicA 422 0.0995 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.1267 1bobA 320 0.1300 d.108.1.1 40816 1nmtA 392 0.1838 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.361 2givA 295 4.861 d.108.1.1 135253 2du2A 374 8.387 2f9sA 151 11.05 c.47.1.10 133168 1jmvA 141 12.79 c.26.2.4 66897 2hqyA 305 14.37 2a6mA 155 14.60 d.58.57.1 126287 2f5gA 133 15.09 d.58.57.1 132991 2fyxA 143 18.31 d.58.57.1 134411 1kzfA 230 19.76 d.108.1.3 73354 2r0yA 311 21.06 1qo8A 566 24.70 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2qh8A 302 25.14 1mejA 223 25.26 c.65.1.1 79029 2pd8A 149 25.99 2pdrA 149 28.49 1yleA 342 28.70 d.108.1.8 123647 1fy7A 278 33.45 d.108.1.1 40817 1vr9A 213 34.13 d.37.1.1,d.37.1.1 120446,120447 2d4pA 141 35.19 1ewjA 126 35.56 d.32.1.2 59526 1st9A 143 35.99 c.47.1.10 98987 2hxwA 237 36.07 2gaeA 346 37.75 1wqjB 80 38.31 1svjA 156 40.99 d.220.1.1 106049 2uv4A 152 44.61 1xkfA 133 47.32 d.37.1.1,d.37.1.1 122077,122078 2ariA 39 47.40 1tq8A 163 48.66 c.26.2.4 107204 1wkbA 810 48.81 2ef7A 133 51.36 2bkrA 212 51.81 d.3.1.7 128710 2p67A 341 51.98 1ecsA 126 57.35 d.32.1.2 59407 1v0wA 506 58.52 d.136.1.2,d.136.1.2 108220,108221 1goxA 369 59.05 c.1.4.1 28607 2yu6A 141 60.14 1uehA 253 60.79 c.101.1.1 99259 1y0pA 571 61.52 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2ae0X 345 63.89 1mkzA 172 64.50 c.57.1.1 84998 2ftxB 64 70.24 d.300.1.2 134086 2vjvA 159 71.29 1kngA 156 72.00 c.47.1.10 72777 1meoA 209 72.34 c.65.1.1 79035 2bonA 332 72.40 3stdA 165 74.31 d.17.4.1 38073 2yzqA 282 76.97 1pvmA 184 79.63 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1g97A 459 82.63 b.81.1.4,c.68.1.5 60394,60395 2e5vA 472 85.16 1qysA 106 85.64 k.41.1.1 96603 2vg0A 227 86.57 2nliA 368 87.60 2yutA 207 87.67 2abqA 306 88.02 c.72.1.1 126528 2a8eA 220 89.49 d.296.1.1 126397