# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 8.96e-12 d.108.1.1 84979 2pdoA 144 2.85e-11 1yr0A 175 7.56e-11 d.108.1.1 123905 2j8mA 172 7.82e-11 1yvoA 172 9.53e-11 d.108.1.1 124106 1vhsA 175 1.55e-10 d.108.1.1 100698 2ge3A 170 1.84e-10 d.108.1.1 135044 2q4vA 170 2.01e-10 d.108.1.1 139878 1z4eA 153 2.08e-10 d.108.1.1 124431 2fiaA 162 2.81e-10 d.108.1.1 133514 3c26A 266 3.33e-10 2i79A 172 3.49e-10 1ufhA 180 5.34e-10 d.108.1.1 88485 1u6mA 199 5.82e-10 d.108.1.1 113069 2r7hA 177 5.94e-10 1qsmA 152 7.12e-10 d.108.1.1 40808 1s3zA 165 7.37e-10 d.108.1.1 105250 1on0A 158 9.07e-10 d.108.1.1 87095 1tiqA 180 1.05e-09 d.108.1.1 107010 1wwzA 159 1.23e-09 d.108.1.1 121380 2dxqA 150 1.24e-09 2b5gA 171 1.30e-09 d.108.1.1 127892 2cy2A 174 1.37e-09 d.108.1.1 131016 2euiA 153 1.56e-09 d.108.1.1 132387 2fl4A 149 1.84e-09 d.108.1.1 133706 1qsoA 149 1.91e-09 d.108.1.1 40812 2i6cA 160 1.97e-09 d.108.1.1 137095 2oh1A 179 2.03e-09 1vkcA 158 2.14e-09 d.108.1.1 113663 2ob0A 170 2.21e-09 2cntA 160 2.22e-09 2fe7A 166 2.55e-09 d.108.1.1 133325 1i1dA 161 4.78e-09 d.108.1.1 61526 2ae6A 166 4.98e-09 d.108.1.1 126600 1l0cA 207 5.06e-09 d.108.1.1 73393 1i21A 159 5.41e-09 d.108.1.1 61549 1y9kA 157 6.05e-09 d.108.1.1 122779 2q0yA 153 6.53e-09 1kuxA 207 6.56e-09 d.108.1.1 73021 2pc1A 201 6.56e-09 1qstA 160 7.58e-09 d.108.1.1 40804 1cjwA 166 7.63e-09 d.108.1.1 40818 5gcnA 166 8.00e-09 d.108.1.1 40807 1p0hA 318 9.43e-09 d.108.1.1 93866 1i12A 160 1.01e-08 d.108.1.1 61515 2prbA 196 1.27e-08 1y7rA 133 1.41e-08 d.108.1.1 122716 2c27A 315 1.63e-08 d.108.1.1 129659 1gheA 177 1.95e-08 d.108.1.1 76222 1q2yA 140 2.14e-08 d.108.1.1 95655 1yvkA 163 2.35e-08 d.108.1.1 124101 1b6bA 174 2.42e-08 d.108.1.1 40819 1bo4A 168 2.47e-08 d.108.1.1 40798 1yghA 164 2.91e-08 d.108.1.1 40802 2reeA 224 3.62e-08 3blnA 143 3.70e-08 2aj6A 159 4.18e-08 d.108.1.1 126841 2qecA 204 4.52e-08 2bswA 146 5.53e-08 d.108.1.1 129127 1xebA 150 5.79e-08 d.108.1.1 115219 2fiwA 172 6.41e-08 d.108.1.1 133539 1y9wA 140 6.46e-08 d.108.1.1 122783 1yx0A 159 7.11e-08 d.108.1.1 124168 2jdcA 146 7.76e-08 1n71A 180 8.17e-08 d.108.1.1 85370 1z4rA 168 1.18e-07 d.108.1.1 124444 2ozgA 396 1.62e-07 2ganA 190 1.94e-07 d.108.1.1 134889 1nslA 184 2.04e-07 d.108.1.1 86137 2g3aA 152 2.92e-07 d.108.1.1 134557 2fckA 181 3.81e-07 d.108.1.1 133272 1b87A 181 5.48e-07 d.108.1.1 40797 1m4iA 181 5.76e-07 d.108.1.1 74457 2atrA 138 6.57e-07 d.108.1.1 127305 2a4nA 182 8.42e-07 d.108.1.1 126159 2ozhA 142 8.90e-07 1yreA 197 1.28e-06 d.108.1.1 123919 2qmlA 198 1.51e-06 2hv2A 400 2.31e-06 2ft0A 235 2.76e-06 1sqhA 312 2.92e-06 d.108.1.5 98966 2r98A 456 3.03e-06 2fsrA 195 9.27e-06 d.108.1.1 134036 2o28A 184 1.06e-05 2z10A 194 1.51e-05 1s7kA 182 1.64e-05 d.108.1.1 118878 2i00A 406 8.06e-05 1yk3A 210 0.002338 d.108.1.1 123493 2g0bA 198 0.008917 2q04A 211 0.03563 1iicA 422 0.2353 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.2681 1nmtA 392 0.2775 d.108.1.2,d.108.1.2 40823,40824 1xmtA 103 0.3285 d.108.1.1 115561 1bobA 320 0.5436 d.108.1.1 40816 1ro5A 201 0.6785 d.108.1.3 105023 2p0wA 324 0.7987 2pq8A 278 4.337 1yleA 342 6.959 d.108.1.8 123647 2hqyA 305 7.036 2givA 295 7.104 d.108.1.1 135253 1ewjA 126 13.72 d.32.1.2 59526 1p2hA 571 21.58 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1ta9A 450 26.20 1qo8A 566 28.42 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2hxwA 237 33.30 2fyxA 143 33.40 d.58.57.1 134411 2d4pA 141 33.85 2ef7A 133 35.37 1trb 320 35.63 1vr9A 213 38.41 d.37.1.1,d.37.1.1 120446,120447 1pvmA 184 38.95 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1g97A 459 40.09 b.81.1.4,c.68.1.5 60394,60395 1ecsA 126 41.02 d.32.1.2 59407 1y0pA 571 43.11 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2yzqA 282 43.75 2a6mA 155 43.96 d.58.57.1 126287 1lj1A 571 44.03 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 2uv4A 152 45.92 2pd8A 149 47.70 2pdrA 149 49.42 2f5gA 133 57.04 d.58.57.1 132991 1fy7A 278 61.33 d.108.1.1 40817 1o50A 157 63.17 d.37.1.1,d.37.1.1 92478,92479 2f9sA 151 65.98 c.47.1.10 133168 1svjA 156 68.37 d.220.1.1 106049 2du2A 374 69.44 1wwaX 109 69.73 b.1.1.4 21775 2nycA 144 71.79 d.37.1.1 138812 1kngA 156 71.87 c.47.1.10 72777 2o16A 160 74.40 d.37.1.1,d.37.1.1 138869,138870 1y5hA 133 74.88 d.37.1.1,d.37.1.1 122635,122636 2ar1A 172 75.01 b.122.1.8 127187 1jq5A 370 75.17 e.22.1.2 67084 2yziA 138 78.38 1wkbA 810 81.92 1qysA 106 83.11 k.41.1.1 96603 1xkfA 133 87.09 d.37.1.1,d.37.1.1 122077,122078 1m64A 571 87.47 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685