# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 1.01e-11 d.108.1.1 84979 2pdoA 144 4.41e-11 1yr0A 175 8.93e-11 d.108.1.1 123905 2j8mA 172 1.43e-10 1yvoA 172 1.86e-10 d.108.1.1 124106 2fiaA 162 2.14e-10 d.108.1.1 133514 1vhsA 175 2.19e-10 d.108.1.1 100698 1z4eA 153 2.20e-10 d.108.1.1 124431 2i79A 172 2.42e-10 3c26A 266 2.94e-10 2ge3A 170 3.12e-10 d.108.1.1 135044 1ufhA 180 4.50e-10 d.108.1.1 88485 2fl4A 149 5.81e-10 d.108.1.1 133706 1u6mA 199 6.75e-10 d.108.1.1 113069 1s3zA 165 7.25e-10 d.108.1.1 105250 2q4vA 170 8.96e-10 d.108.1.1 139878 2cy2A 174 9.12e-10 d.108.1.1 131016 2r7hA 177 9.45e-10 2cntA 160 1.08e-09 2b5gA 171 1.10e-09 d.108.1.1 127892 1tiqA 180 1.10e-09 d.108.1.1 107010 1wwzA 159 1.23e-09 d.108.1.1 121380 2dxqA 150 1.39e-09 1qsmA 152 1.52e-09 d.108.1.1 40808 2oh1A 179 1.80e-09 2euiA 153 1.84e-09 d.108.1.1 132387 1on0A 158 1.97e-09 d.108.1.1 87095 2ae6A 166 1.99e-09 d.108.1.1 126600 2fe7A 166 2.44e-09 d.108.1.1 133325 1qsoA 149 2.93e-09 d.108.1.1 40812 2ob0A 170 3.33e-09 1y9kA 157 3.39e-09 d.108.1.1 122779 1y7rA 133 3.41e-09 d.108.1.1 122716 1vkcA 158 4.02e-09 d.108.1.1 113663 2c27A 315 4.10e-09 d.108.1.1 129659 1i1dA 161 4.16e-09 d.108.1.1 61526 2i6cA 160 4.76e-09 d.108.1.1 137095 1l0cA 207 5.66e-09 d.108.1.1 73393 1p0hA 318 6.32e-09 d.108.1.1 93866 1qstA 160 6.41e-09 d.108.1.1 40804 1bo4A 168 6.72e-09 d.108.1.1 40798 2q0yA 153 7.94e-09 1y9wA 140 8.94e-09 d.108.1.1 122783 1cjwA 166 9.31e-09 d.108.1.1 40818 1yvkA 163 1.10e-08 d.108.1.1 124101 1yghA 164 1.18e-08 d.108.1.1 40802 1kuxA 207 1.38e-08 d.108.1.1 73021 1q2yA 140 1.50e-08 d.108.1.1 95655 2pc1A 201 1.51e-08 1i21A 159 1.59e-08 d.108.1.1 61549 2prbA 196 1.62e-08 1gheA 177 1.83e-08 d.108.1.1 76222 2aj6A 159 1.99e-08 d.108.1.1 126841 1i12A 160 2.12e-08 d.108.1.1 61515 2reeA 224 2.66e-08 3blnA 143 2.77e-08 5gcnA 166 2.79e-08 d.108.1.1 40807 1z4rA 168 3.45e-08 d.108.1.1 124444 1b6bA 174 4.16e-08 d.108.1.1 40819 1n71A 180 4.26e-08 d.108.1.1 85370 1xebA 150 4.82e-08 d.108.1.1 115219 2ganA 190 4.95e-08 d.108.1.1 134889 2g3aA 152 6.32e-08 d.108.1.1 134557 2qecA 204 6.51e-08 2fiwA 172 8.11e-08 d.108.1.1 133539 1b87A 181 1.12e-07 d.108.1.1 40797 1yx0A 159 1.26e-07 d.108.1.1 124168 2bswA 146 1.54e-07 d.108.1.1 129127 2ozgA 396 1.70e-07 2jdcA 146 2.23e-07 2atrA 138 3.74e-07 d.108.1.1 127305 1nslA 184 5.02e-07 d.108.1.1 86137 2ozhA 142 5.38e-07 2a4nA 182 6.24e-07 d.108.1.1 126159 1m4iA 181 6.60e-07 d.108.1.1 74457 2fckA 181 1.09e-06 d.108.1.1 133272 2ft0A 235 1.14e-06 2qmlA 198 1.62e-06 2hv2A 400 3.60e-06 1sqhA 312 4.15e-06 d.108.1.5 98966 1yreA 197 4.35e-06 d.108.1.1 123919 2r98A 456 5.38e-06 2o28A 184 8.00e-06 2fsrA 195 4.49e-05 d.108.1.1 134036 1s7kA 182 5.10e-05 d.108.1.1 118878 2i00A 406 0.000172 2z10A 194 0.000188 1yk3A 210 0.004333 d.108.1.1 123493 2g0bA 198 0.02149 2q04A 211 0.03356 1ro5A 201 0.1172 d.108.1.3 105023 1bob 320 0.1540 1xmtA 103 0.1733 d.108.1.1 115561 2p0wA 324 0.3669 1bobA 320 0.3958 d.108.1.1 40816 1iicA 422 0.4084 d.108.1.2,d.108.1.2 62422,62423 1nmtA 392 0.5979 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 2.440 2du2A 374 7.927 2givA 295 7.990 d.108.1.1 135253 1kzfA 230 14.93 d.108.1.3 73354 2f9sA 151 14.98 c.47.1.10 133168 2a6mA 155 18.72 d.58.57.1 126287 1qo8A 566 19.01 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2pd8A 149 19.86 2f5gA 133 21.17 d.58.57.1 132991 2fyxA 143 21.43 d.58.57.1 134411 2pdrA 149 25.15 2ef7A 133 26.98 2uv4A 152 27.01 2d4pA 141 27.27 2hxwA 237 30.90 1yleA 342 35.76 d.108.1.8 123647 1vr9A 213 41.11 d.37.1.1,d.37.1.1 120446,120447 1jmvA 141 41.85 c.26.2.4 66897 1ewjA 126 44.40 d.32.1.2 59526 2qh8A 302 45.67 1xkfA 133 46.26 d.37.1.1,d.37.1.1 122077,122078 2yzqA 282 47.16 1mejA 223 49.53 c.65.1.1 79029 1lj1A 571 50.98 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1wqjB 80 51.07 1svjA 156 53.22 d.220.1.1 106049 1p2hA 571 54.14 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1st9A 143 56.16 c.47.1.10 98987 1y0pA 571 56.90 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2vjvA 159 60.92 1tq8A 163 61.50 c.26.2.4 107204 1zfjA 491 62.82 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2hqyA 305 63.81 2r0yA 311 63.86 2cxaA 256 69.54 d.108.1.6 130993 2ariA 39 70.87 2ftxB 64 73.27 d.300.1.2 134086 2yu6A 141 73.49 1fy7A 278 74.97 d.108.1.1 40817 1mkzA 172 77.86 c.57.1.1 84998 2rduA 387 83.82 1v0wA 506 84.24 d.136.1.2,d.136.1.2 108220,108221 2bf6A 449 86.09 1ss4A 153 87.11 d.32.1.6 105976 2nliA 368 88.78 2yziA 138 88.83 2oh5A 248 89.76