# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 3.65e-16 d.108.1.1 84979 2pdoA 144 2.17e-15 1yr0A 175 5.92e-15 d.108.1.1 123905 2j8mA 172 6.14e-15 2fiaA 162 9.59e-15 d.108.1.1 133514 1vhsA 175 1.52e-14 d.108.1.1 100698 1yvoA 172 1.55e-14 d.108.1.1 124106 3c26A 266 1.73e-14 1tiqA 180 2.48e-14 d.108.1.1 107010 1z4eA 153 2.71e-14 d.108.1.1 124431 2i79A 172 3.85e-14 1u6mA 199 4.06e-14 d.108.1.1 113069 2ge3A 170 4.26e-14 d.108.1.1 135044 1s3zA 165 7.02e-14 d.108.1.1 105250 2fl4A 149 7.68e-14 d.108.1.1 133706 2cntA 160 7.74e-14 1ufhA 180 9.17e-14 d.108.1.1 88485 1on0A 158 1.15e-13 d.108.1.1 87095 2cy2A 174 1.23e-13 d.108.1.1 131016 2q4vA 170 1.47e-13 d.108.1.1 139878 2r7hA 177 1.69e-13 2euiA 153 2.02e-13 d.108.1.1 132387 1wwzA 159 2.63e-13 d.108.1.1 121380 2dxqA 150 2.81e-13 2b5gA 171 2.85e-13 d.108.1.1 127892 1qsmA 152 3.84e-13 d.108.1.1 40808 1qsoA 149 4.53e-13 d.108.1.1 40812 2oh1A 179 4.88e-13 1y9kA 157 5.73e-13 d.108.1.1 122779 2ae6A 166 6.09e-13 d.108.1.1 126600 1y7rA 133 9.42e-13 d.108.1.1 122716 1vkcA 158 9.53e-13 d.108.1.1 113663 2fe7A 166 1.05e-12 d.108.1.1 133325 1i1dA 161 1.13e-12 d.108.1.1 61526 2ob0A 170 1.31e-12 1yvkA 163 1.40e-12 d.108.1.1 124101 1qstA 160 1.46e-12 d.108.1.1 40804 5gcnA 166 1.51e-12 d.108.1.1 40807 2prbA 196 1.82e-12 2i6cA 160 1.85e-12 d.108.1.1 137095 1i21A 159 2.29e-12 d.108.1.1 61549 1l0cA 207 2.68e-12 d.108.1.1 73393 1i12A 160 2.95e-12 d.108.1.1 61515 1bo4A 168 2.98e-12 d.108.1.1 40798 1kuxA 207 3.03e-12 d.108.1.1 73021 1yghA 164 3.22e-12 d.108.1.1 40802 2pc1A 201 3.90e-12 1y9wA 140 5.41e-12 d.108.1.1 122783 2q0yA 153 5.88e-12 2c27A 315 7.09e-12 d.108.1.1 129659 1gheA 177 9.00e-12 d.108.1.1 76222 2reeA 224 1.06e-11 2ganA 190 1.11e-11 d.108.1.1 134889 1z4rA 168 1.24e-11 d.108.1.1 124444 1cjwA 166 1.31e-11 d.108.1.1 40818 2aj6A 159 1.40e-11 d.108.1.1 126841 1q2yA 140 1.89e-11 d.108.1.1 95655 1n71A 180 2.40e-11 d.108.1.1 85370 1p0hA 318 2.52e-11 d.108.1.1 93866 3blnA 143 2.63e-11 1b6bA 174 5.37e-11 d.108.1.1 40819 1xebA 150 6.83e-11 d.108.1.1 115219 2ozgA 396 8.03e-11 2g3aA 152 8.85e-11 d.108.1.1 134557 1yx0A 159 1.13e-10 d.108.1.1 124168 2fiwA 172 1.14e-10 d.108.1.1 133539 2qecA 204 1.17e-10 2bswA 146 2.70e-10 d.108.1.1 129127 2atrA 138 3.82e-10 d.108.1.1 127305 2jdcA 146 4.36e-10 1b87A 181 8.34e-10 d.108.1.1 40797 1yreA 197 9.54e-10 d.108.1.1 123919 2ozhA 142 1.07e-09 1nslA 184 1.29e-09 d.108.1.1 86137 2a4nA 182 1.57e-09 d.108.1.1 126159 1m4iA 181 2.22e-09 d.108.1.1 74457 2ft0A 235 2.81e-09 2fckA 181 4.58e-09 d.108.1.1 133272 2qmlA 198 4.64e-09 1sqhA 312 8.77e-09 d.108.1.5 98966 2r98A 456 3.65e-08 2o28A 184 5.53e-08 2hv2A 400 1.35e-07 2fsrA 195 2.44e-07 d.108.1.1 134036 1s7kA 182 3.10e-07 d.108.1.1 118878 2i00A 406 5.60e-07 2z10A 194 9.65e-07 1yk3A 210 0.000133 d.108.1.1 123493 2g0bA 198 0.004298 1ro5A 201 0.006340 d.108.1.3 105023 1bob 320 0.006399 2q04A 211 0.006914 2p0wA 324 0.01457 1bobA 320 0.01567 d.108.1.1 40816 1xmtA 103 0.04798 d.108.1.1 115561 1iicA 422 0.1056 d.108.1.2,d.108.1.2 62422,62423 1nmtA 392 0.1140 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 0.2782 2cxaA 256 0.4121 d.108.1.6 130993 2pdrA 149 0.6674 2zadA 345 1.807 1kzfA 230 1.999 d.108.1.3 73354 2f9sA 151 2.978 c.47.1.10 133168 1f1xA 322 3.348 d.32.1.3,d.32.1.3 83208,83209 2nutA 769 3.396 2hqyA 305 3.695 1cxlA 686 3.794 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1ot1A 686 4.422 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1q35A 320 4.724 c.94.1.1 95661 1ewjA 126 5.038 d.32.1.2 59526 2ef7A 133 7.379 2d4pA 141 7.607 2r0yA 311 7.615 1qorA 327 7.675 b.35.1.2,c.2.1.1 24766,29782 3stdA 165 8.298 d.17.4.1 38073 2gaeA 346 8.331 1pvmA 184 9.947 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2a6mA 155 10.05 d.58.57.1 126287 1nuiA 255 10.36 e.13.1.2,g.41.3.2 86194,86195 1st9A 143 10.63 c.47.1.10 98987 2f5gA 133 11.36 d.58.57.1 132991 1c2pA 576 12.22 e.8.1.4 43117 1fy7A 278 14.08 d.108.1.1 40817 2pnqA 467 15.02 1pamA 686 16.58 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1pszA 303 16.58 c.92.2.2 35600 2vqcA 118 17.82 1vr9A 213 17.95 d.37.1.1,d.37.1.1 120446,120447 2uv4A 152 18.04 1zfjA 491 18.16 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1h4pA 408 18.25 c.1.8.3 90617 1lokA 291 18.52 c.56.5.4 78122 2fdsA 352 18.88 c.1.2.3 133320 2yziA 138 19.39 2basA 431 20.01 c.1.33.1,d.110.6.2 128244,128245 1dgwA 178 20.14 b.82.1.2 28090 2pd8A 149 20.88 2hxwA 237 22.01 1dtyA 429 22.93 c.67.1.4 34495 2culA 232 23.03 c.3.1.7 130813 2yzqA 282 23.09 1yleA 342 23.74 d.108.1.8 123647 1f1uA 323 25.37 d.32.1.3,d.32.1.3 83200,83201 2iafA 151 26.69 d.81.2.1 137157 2fwhA 134 28.23 c.47.1.1 134242 1kngA 156 29.03 c.47.1.10 72777 1toaA 313 29.72 c.92.2.2 35598 2ppvA 332 30.44 1gteA 1025 30.67 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2o16A 160 31.08 d.37.1.1,d.37.1.1 138869,138870 2ch5A 347 32.32 c.55.1.5,c.55.1.5 130453,130454 1xkfA 133 32.49 d.37.1.1,d.37.1.1 122077,122078 1tbgA 340 33.14 b.69.4.1 27649 1k0fA 277 33.48 c.92.2.2 71974 1rm6A 769 33.66 d.41.1.1,d.133.1.1 111872,111873 1bia 321 34.38 3bt7A 369 34.55 1e1aA 314 35.09 b.68.6.1 59155 2givA 295 36.57 d.108.1.1 135253 2anpA 291 38.86 c.56.5.4 127056 1ibcA 194 39.49 c.17.1.1 30997 2fyxA 143 39.59 d.58.57.1 134411 2vjvA 159 39.82 2v84A 343 39.91 2eb4A 267 43.52 2nycA 144 43.53 d.37.1.1 138812 1svjA 156 43.53 d.220.1.1 106049 2arfA 165 43.55 2p5qA 170 43.78 1mkzA 172 44.10 c.57.1.1 84998 2ze0A 555 44.97 1dzfA 215 46.61 c.52.3.1,d.78.1.1 33344,39753 1bw0A 416 47.14 c.67.1.1 34385 1rtqA 299 47.70 c.56.5.4 97819 1kdgA 546 48.48 c.3.1.2,d.16.1.1 77337,77338 2ghsA 326 49.84 b.68.6.1 135209 1yzfA 195 50.00 c.23.10.5 124275 1v71A 323 50.38 c.79.1.1 119859 1kssA 571 51.00 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1gxjA 186 51.91 d.215.1.1 70707 2nn6B 249 52.58 1zzoA 136 52.59 c.47.1.10 125913 2nzlA 392 54.86 2a40B 260 55.08 d.151.1.1 126139 2fp3A 316 55.52 2o57A 297 55.99 2z8pA 241 56.11 2qh8A 302 56.89 2o0yA 260 58.90 1kfiA 572 59.00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 3cbtA 237 59.59 1xcrA 316 59.81 d.290.1.2 121860 2oodA 475 60.57 2h0aA 276 61.64 2rduA 387 61.93 1zc6A 305 62.00 c.55.1.5,c.55.1.5 124888,124889 2ftxB 64 62.47 d.300.1.2 134086 2abqA 306 63.45 c.72.1.1 126528 1ecsA 126 64.96 d.32.1.2 59407 2pceA 386 65.30 2b18A 164 66.25 1nnsA 326 66.89 c.88.1.1 85910 1rdzA 337 67.90 e.7.1.1 42882 2bkrA 212 68.00 d.3.1.7 128710 2v74B 346 68.69 2cmxA 118 68.94 1ne9A 335 69.22 d.108.1.4,d.108.1.4 91839,91840 2ouxA 286 70.16 1lurA 339 70.69 b.30.5.4 84717 1dqrA 557 72.03 c.80.1.2 35305 1tvfA 369 73.26 b.105.1.2,e.3.1.1 107358,107359 2qt1A 207 73.68 1g97A 459 73.79 b.81.1.4,c.68.1.5 60394,60395 1ppjA 446 73.90 d.185.1.1,d.185.1.1 104252,104253 1k77A 260 74.39 c.1.15.5 72096 1o5oA 221 74.54 c.61.1.1 92509 2nxoA 291 75.51 1hc7A 477 77.11 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2a8eA 220 78.53 d.296.1.1 126397 2b1kA 168 79.58 2vg2A 284 80.79 1o50A 157 81.22 d.37.1.1,d.37.1.1 92478,92479 1pzsA 208 82.29 b.1.8.1 104397 1y5hA 133 84.76 d.37.1.1,d.37.1.1 122635,122636 2au3A 407 85.11 1jkxA 212 85.94 c.65.1.1 66813 3c8dA 403 86.00 2f3yA 148 88.07 1idpA 172 88.74 d.17.4.1 83685 2dyuA 334 89.87