# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.60e-12 d.108.1.1 84979 2pdoA 144 1.48e-11 1yr0A 175 3.15e-11 d.108.1.1 123905 2j8mA 172 5.31e-11 1yvoA 172 6.79e-11 d.108.1.1 124106 3c26A 266 8.46e-11 1z4eA 153 8.70e-11 d.108.1.1 124431 2i79A 172 9.03e-11 2fiaA 162 1.05e-10 d.108.1.1 133514 1vhsA 175 1.15e-10 d.108.1.1 100698 2ge3A 170 1.16e-10 d.108.1.1 135044 2fl4A 149 1.88e-10 d.108.1.1 133706 1ufhA 180 1.88e-10 d.108.1.1 88485 1u6mA 199 1.93e-10 d.108.1.1 113069 1s3zA 165 2.69e-10 d.108.1.1 105250 2r7hA 177 3.15e-10 2b5gA 171 3.44e-10 d.108.1.1 127892 2q4vA 170 3.48e-10 d.108.1.1 139878 2cy2A 174 3.75e-10 d.108.1.1 131016 2cntA 160 4.57e-10 1wwzA 159 4.63e-10 d.108.1.1 121380 1tiqA 180 5.13e-10 d.108.1.1 107010 1qsmA 152 5.15e-10 d.108.1.1 40808 2dxqA 150 5.17e-10 2euiA 153 6.15e-10 d.108.1.1 132387 2ae6A 166 7.37e-10 d.108.1.1 126600 2oh1A 179 7.64e-10 1on0A 158 1.01e-09 d.108.1.1 87095 2fe7A 166 1.13e-09 d.108.1.1 133325 1qsoA 149 1.27e-09 d.108.1.1 40812 2ob0A 170 1.30e-09 2c27A 315 1.30e-09 d.108.1.1 129659 1i1dA 161 1.39e-09 d.108.1.1 61526 1y9kA 157 1.41e-09 d.108.1.1 122779 1y7rA 133 1.66e-09 d.108.1.1 122716 2i6cA 160 1.67e-09 d.108.1.1 137095 1vkcA 158 1.89e-09 d.108.1.1 113663 1l0cA 207 2.18e-09 d.108.1.1 73393 1p0hA 318 2.21e-09 d.108.1.1 93866 1qstA 160 2.62e-09 d.108.1.1 40804 1bo4A 168 2.79e-09 d.108.1.1 40798 1cjwA 166 3.60e-09 d.108.1.1 40818 1i21A 159 3.74e-09 d.108.1.1 61549 1y9wA 140 4.05e-09 d.108.1.1 122783 1yghA 164 4.49e-09 d.108.1.1 40802 2q0yA 153 4.53e-09 1kuxA 207 4.77e-09 d.108.1.1 73021 1i12A 160 4.78e-09 d.108.1.1 61515 2pc1A 201 5.45e-09 1yvkA 163 5.48e-09 d.108.1.1 124101 2prbA 196 5.74e-09 1q2yA 140 6.71e-09 d.108.1.1 95655 1gheA 177 8.74e-09 d.108.1.1 76222 2reeA 224 1.02e-08 2aj6A 159 1.08e-08 d.108.1.1 126841 5gcnA 166 1.09e-08 d.108.1.1 40807 1b6bA 174 1.51e-08 d.108.1.1 40819 3blnA 143 1.57e-08 2ganA 190 1.73e-08 d.108.1.1 134889 1xebA 150 1.98e-08 d.108.1.1 115219 1n71A 180 2.34e-08 d.108.1.1 85370 1z4rA 168 2.55e-08 d.108.1.1 124444 2g3aA 152 2.80e-08 d.108.1.1 134557 2qecA 204 3.51e-08 1yx0A 159 4.78e-08 d.108.1.1 124168 2fiwA 172 5.08e-08 d.108.1.1 133539 1b87A 181 5.70e-08 d.108.1.1 40797 2bswA 146 7.66e-08 d.108.1.1 129127 2jdcA 146 1.14e-07 2ozgA 396 1.27e-07 2atrA 138 1.77e-07 d.108.1.1 127305 1nslA 184 2.25e-07 d.108.1.1 86137 2ozhA 142 2.46e-07 1m4iA 181 3.26e-07 d.108.1.1 74457 2a4nA 182 3.44e-07 d.108.1.1 126159 2fckA 181 5.28e-07 d.108.1.1 133272 2ft0A 235 1.04e-06 2qmlA 198 1.11e-06 1sqhA 312 1.58e-06 d.108.1.5 98966 1yreA 197 1.98e-06 d.108.1.1 123919 2hv2A 400 2.30e-06 2r98A 456 3.08e-06 2o28A 184 3.56e-06 1s7kA 182 2.90e-05 d.108.1.1 118878 2fsrA 195 3.09e-05 d.108.1.1 134036 2z10A 194 0.000100 2i00A 406 0.000115 1yk3A 210 0.003378 d.108.1.1 123493 2g0bA 198 0.02285 2q04A 211 0.02592 1bob 320 0.1048 1ro5A 201 0.1053 d.108.1.3 105023 1xmtA 103 0.1317 d.108.1.1 115561 2p0wA 324 0.2097 1bobA 320 0.2508 d.108.1.1 40816 1iicA 422 0.3960 d.108.1.2,d.108.1.2 62422,62423 1nmtA 392 0.6164 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.701 2givA 295 5.531 d.108.1.1 135253 2du2A 374 9.504 2f9sA 151 13.37 c.47.1.10 133168 2a6mA 155 15.48 d.58.57.1 126287 1kzfA 230 17.27 d.108.1.3 73354 2fyxA 143 17.44 d.58.57.1 134411 2f5gA 133 17.53 d.58.57.1 132991 2hxwA 237 21.33 1qo8A 566 21.53 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2pd8A 149 27.50 1jmvA 141 31.15 c.26.2.4 66897 1yleA 342 31.94 d.108.1.8 123647 2pdrA 149 32.45 1ewjA 126 33.07 d.32.1.2 59526 1mejA 223 36.24 c.65.1.1 79029 2uv4A 152 36.71 2ef7A 133 38.03 2hqyA 305 39.41 2d4pA 141 41.52 2qh8A 302 41.53 1vr9A 213 41.71 d.37.1.1,d.37.1.1 120446,120447 1xkfA 133 49.48 d.37.1.1,d.37.1.1 122077,122078 1wqjB 80 50.23 2vjvA 159 52.59 1tq8A 163 55.19 c.26.2.4 107204 2ariA 39 55.37 1fy7A 278 55.71 d.108.1.1 40817 1p2hA 571 57.43 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1st9A 143 57.94 c.47.1.10 98987 1lj1A 571 58.78 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 2r0yA 311 63.89 2ftxB 64 65.19 d.300.1.2 134086 1y0pA 571 67.49 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1zzoA 136 67.90 c.47.1.10 125913 1zfjA 491 69.27 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ecsA 126 69.35 d.32.1.2 59407 1svjA 156 71.00 d.220.1.1 106049 2yzqA 282 72.22 2oh5A 248 75.80 2nykA 285 75.86 1ss4A 153 77.89 d.32.1.6 105976 2gaeA 346 78.92 2yu6A 141 80.30 2ae0X 345 80.95 1v0wA 506 84.22 d.136.1.2,d.136.1.2 108220,108221 1mkzA 172 84.26 c.57.1.1 84998 2a8eA 220 87.53 d.296.1.1 126397