# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 3.12e-13 d.108.1.1 84979 2pdoA 144 2.36e-12 1yr0A 175 3.94e-12 d.108.1.1 123905 2j8mA 172 5.92e-12 2fl4A 149 9.87e-12 d.108.1.1 133706 3c26A 266 9.90e-12 1yvoA 172 1.02e-11 d.108.1.1 124106 2fiaA 162 1.13e-11 d.108.1.1 133514 1u6mA 199 1.61e-11 d.108.1.1 113069 1ufhA 180 1.82e-11 d.108.1.1 88485 2i79A 172 2.02e-11 1z4eA 153 2.11e-11 d.108.1.1 124431 2q4vA 170 2.74e-11 d.108.1.1 139878 2ge3A 170 3.20e-11 d.108.1.1 135044 1vhsA 175 3.65e-11 d.108.1.1 100698 2b5gA 171 4.91e-11 d.108.1.1 127892 2cy2A 174 5.07e-11 d.108.1.1 131016 2r7hA 177 5.42e-11 1qsmA 152 5.51e-11 d.108.1.1 40808 1s3zA 165 6.83e-11 d.108.1.1 105250 2dxqA 150 7.17e-11 2cntA 160 9.04e-11 2euiA 153 1.06e-10 d.108.1.1 132387 1on0A 158 1.08e-10 d.108.1.1 87095 2ae6A 166 1.21e-10 d.108.1.1 126600 1wwzA 159 1.28e-10 d.108.1.1 121380 2c27A 315 1.53e-10 d.108.1.1 129659 2oh1A 179 1.55e-10 1qsoA 149 1.62e-10 d.108.1.1 40812 2fe7A 166 1.68e-10 d.108.1.1 133325 1vkcA 158 1.73e-10 d.108.1.1 113663 2i6cA 160 1.77e-10 d.108.1.1 137095 1tiqA 180 2.30e-10 d.108.1.1 107010 1i1dA 161 2.79e-10 d.108.1.1 61526 1y7rA 133 2.82e-10 d.108.1.1 122716 1y9kA 157 3.09e-10 d.108.1.1 122779 2ob0A 170 3.29e-10 1l0cA 207 3.85e-10 d.108.1.1 73393 1p0hA 318 4.97e-10 d.108.1.1 93866 1bo4A 168 5.30e-10 d.108.1.1 40798 1y9wA 140 6.12e-10 d.108.1.1 122783 1i21A 159 6.57e-10 d.108.1.1 61549 2q0yA 153 6.61e-10 1qstA 160 6.69e-10 d.108.1.1 40804 1cjwA 166 7.95e-10 d.108.1.1 40818 1kuxA 207 8.84e-10 d.108.1.1 73021 1yvkA 163 9.05e-10 d.108.1.1 124101 2pc1A 201 9.90e-10 1q2yA 140 1.06e-09 d.108.1.1 95655 5gcnA 166 1.09e-09 d.108.1.1 40807 1i12A 160 1.12e-09 d.108.1.1 61515 1yghA 164 1.15e-09 d.108.1.1 40802 1gheA 177 1.37e-09 d.108.1.1 76222 2prbA 196 1.71e-09 2reeA 224 1.97e-09 1b6bA 174 2.06e-09 d.108.1.1 40819 2ganA 190 2.58e-09 d.108.1.1 134889 2aj6A 159 2.66e-09 d.108.1.1 126841 1xebA 150 3.50e-09 d.108.1.1 115219 1yx0A 159 5.17e-09 d.108.1.1 124168 1n71A 180 5.66e-09 d.108.1.1 85370 2g3aA 152 6.34e-09 d.108.1.1 134557 3blnA 143 6.38e-09 1z4rA 168 8.00e-09 d.108.1.1 124444 2bswA 146 1.12e-08 d.108.1.1 129127 2fiwA 172 1.24e-08 d.108.1.1 133539 2qecA 204 1.36e-08 2jdcA 146 1.61e-08 1b87A 181 2.08e-08 d.108.1.1 40797 1nslA 184 3.91e-08 d.108.1.1 86137 2ozgA 396 4.65e-08 2atrA 138 4.94e-08 d.108.1.1 127305 2ozhA 142 6.97e-08 1yreA 197 1.25e-07 d.108.1.1 123919 2a4nA 182 1.33e-07 d.108.1.1 126159 1m4iA 181 1.50e-07 d.108.1.1 74457 2fckA 181 2.45e-07 d.108.1.1 133272 2ft0A 235 4.67e-07 1sqhA 312 5.01e-07 d.108.1.5 98966 2qmlA 198 5.79e-07 2hv2A 400 6.57e-07 2o28A 184 9.60e-07 2r98A 456 1.34e-06 2fsrA 195 8.94e-06 d.108.1.1 134036 1s7kA 182 1.18e-05 d.108.1.1 118878 2z10A 194 1.26e-05 2i00A 406 3.32e-05 1yk3A 210 0.002391 d.108.1.1 123493 2g0bA 198 0.006470 2q04A 211 0.02306 1bob 320 0.1334 1ro5A 201 0.1951 d.108.1.3 105023 2p0wA 324 0.2188 1iicA 422 0.2349 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.2431 d.108.1.1 115561 1bobA 320 0.2817 d.108.1.1 40816 1nmtA 392 0.5170 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 2.261 2givA 295 9.207 d.108.1.1 135253 2yu6A 141 11.58 1vr9A 213 12.96 d.37.1.1,d.37.1.1 120446,120447 2du2A 374 13.89 1kzfA 230 19.15 d.108.1.3 73354 2a6mA 155 21.22 d.58.57.1 126287 2fyxA 143 24.11 d.58.57.1 134411 2f5gA 133 26.48 d.58.57.1 132991 2f9sA 151 26.60 c.47.1.10 133168 2hxwA 237 29.55 2ariA 39 31.93 1yleA 342 39.50 d.108.1.8 123647 2r0yA 311 39.61 2gaeA 346 39.72 2cmxA 118 40.76 2vqcA 118 40.76 2pd8A 149 42.58 2pdrA 149 43.92 1mejA 223 48.04 c.65.1.1 79029 2ef7A 133 49.35 2ae0X 345 50.54 2uv4A 152 55.66 1jmvA 141 56.41 c.26.2.4 66897 1wqjB 80 57.56 2px7A 236 60.04 1ewjA 126 60.17 d.32.1.2 59526 2hqyA 305 61.82 2nykA 285 62.04 1svjA 156 64.24 d.220.1.1 106049 1qo8A 566 66.11 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2d4pA 141 70.45 1ecsA 126 73.03 d.32.1.2 59407 1goxA 369 76.63 c.1.4.1 28607 3cbtA 237 83.23 1ei6A 406 83.53 c.76.1.4 90443 2vjvA 159 83.71 2qh8A 302 87.25