# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 6.29e-13 d.108.1.1 84979 2pdoA 144 4.38e-12 1yr0A 175 4.98e-12 d.108.1.1 123905 2fiaA 162 1.32e-11 d.108.1.1 133514 2j8mA 172 1.52e-11 1yvoA 172 1.75e-11 d.108.1.1 124106 3c26A 266 2.12e-11 1u6mA 199 2.17e-11 d.108.1.1 113069 2i79A 172 2.48e-11 2fl4A 149 2.52e-11 d.108.1.1 133706 1z4eA 153 3.08e-11 d.108.1.1 124431 2ge3A 170 3.73e-11 d.108.1.1 135044 2q4vA 170 4.28e-11 d.108.1.1 139878 1vhsA 175 4.56e-11 d.108.1.1 100698 1ufhA 180 4.74e-11 d.108.1.1 88485 1on0A 158 7.18e-11 d.108.1.1 87095 2b5gA 171 8.69e-11 d.108.1.1 127892 2cy2A 174 9.17e-11 d.108.1.1 131016 1s3zA 165 9.82e-11 d.108.1.1 105250 2dxqA 150 1.03e-10 1tiqA 180 1.09e-10 d.108.1.1 107010 1qsmA 152 1.14e-10 d.108.1.1 40808 2cntA 160 1.23e-10 2oh1A 179 1.42e-10 2r7hA 177 1.60e-10 1wwzA 159 1.76e-10 d.108.1.1 121380 2ae6A 166 1.92e-10 d.108.1.1 126600 1y9kA 157 2.27e-10 d.108.1.1 122779 2euiA 153 2.30e-10 d.108.1.1 132387 2fe7A 166 2.34e-10 d.108.1.1 133325 2c27A 315 2.79e-10 d.108.1.1 129659 2i6cA 160 3.04e-10 d.108.1.1 137095 1qsoA 149 3.27e-10 d.108.1.1 40812 1vkcA 158 3.33e-10 d.108.1.1 113663 2ob0A 170 4.80e-10 1y7rA 133 5.65e-10 d.108.1.1 122716 1i1dA 161 5.74e-10 d.108.1.1 61526 2q0yA 153 5.95e-10 1l0cA 207 6.04e-10 d.108.1.1 73393 1i21A 159 6.69e-10 d.108.1.1 61549 1p0hA 318 8.54e-10 d.108.1.1 93866 1yvkA 163 9.39e-10 d.108.1.1 124101 1y9wA 140 9.67e-10 d.108.1.1 122783 1i12A 160 1.03e-09 d.108.1.1 61515 1cjwA 166 1.08e-09 d.108.1.1 40818 1bo4A 168 1.12e-09 d.108.1.1 40798 1kuxA 207 1.24e-09 d.108.1.1 73021 1q2yA 140 1.54e-09 d.108.1.1 95655 1qstA 160 1.59e-09 d.108.1.1 40804 2prbA 196 1.65e-09 1gheA 177 1.86e-09 d.108.1.1 76222 2aj6A 159 2.05e-09 d.108.1.1 126841 2pc1A 201 2.62e-09 5gcnA 166 2.84e-09 d.108.1.1 40807 1yghA 164 3.17e-09 d.108.1.1 40802 2reeA 224 3.40e-09 2ganA 190 3.58e-09 d.108.1.1 134889 1xebA 150 4.14e-09 d.108.1.1 115219 1b6bA 174 4.32e-09 d.108.1.1 40819 1z4rA 168 4.93e-09 d.108.1.1 124444 1n71A 180 6.63e-09 d.108.1.1 85370 1yx0A 159 8.71e-09 d.108.1.1 124168 3blnA 143 8.78e-09 2fiwA 172 9.40e-09 d.108.1.1 133539 2g3aA 152 9.84e-09 d.108.1.1 134557 2qecA 204 1.22e-08 2bswA 146 1.75e-08 d.108.1.1 129127 2ozgA 396 2.25e-08 1b87A 181 2.53e-08 d.108.1.1 40797 2jdcA 146 2.69e-08 2atrA 138 3.69e-08 d.108.1.1 127305 1nslA 184 5.87e-08 d.108.1.1 86137 2ozhA 142 7.48e-08 2a4nA 182 1.40e-07 d.108.1.1 126159 1m4iA 181 1.44e-07 d.108.1.1 74457 2qmlA 198 2.51e-07 2fckA 181 3.46e-07 d.108.1.1 133272 2ft0A 235 3.97e-07 1yreA 197 4.77e-07 d.108.1.1 123919 1sqhA 312 4.99e-07 d.108.1.5 98966 2hv2A 400 9.55e-07 2r98A 456 1.11e-06 2o28A 184 1.24e-06 1s7kA 182 1.10e-05 d.108.1.1 118878 2fsrA 195 1.16e-05 d.108.1.1 134036 2z10A 194 1.30e-05 2i00A 406 2.99e-05 1yk3A 210 0.001494 d.108.1.1 123493 2g0bA 198 0.006538 2q04A 211 0.01841 1ro5A 201 0.07407 d.108.1.3 105023 1xmtA 103 0.1209 d.108.1.1 115561 1bob 320 0.1320 1iicA 422 0.1730 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.2176 1nmtA 392 0.3000 d.108.1.2,d.108.1.2 40823,40824 1bobA 320 0.3379 d.108.1.1 40816 2pq8A 278 1.975 2givA 295 7.034 d.108.1.1 135253 2du2A 374 12.89 2a6mA 155 16.74 d.58.57.1 126287 2f9sA 151 17.09 c.47.1.10 133168 1vr9A 213 17.46 d.37.1.1,d.37.1.1 120446,120447 2f5gA 133 18.99 d.58.57.1 132991 2fyxA 143 20.51 d.58.57.1 134411 1qo8A 566 20.54 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2gaeA 346 25.46 1kzfA 230 25.59 d.108.1.3 73354 2ef7A 133 26.58 1ewjA 126 27.56 d.32.1.2 59526 2hxwA 237 35.88 2d4pA 141 38.59 1p2hA 571 40.37 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2uv4A 152 40.89 1wqjB 80 40.91 2ae0X 345 43.17 2pd8A 149 44.52 2ariA 39 45.41 1jmvA 141 45.50 c.26.2.4 66897 1ecsA 126 46.45 d.32.1.2 59407 2yu6A 141 47.94 2hqyA 305 50.56 1yleA 342 55.38 d.108.1.8 123647 1st9A 143 56.44 c.47.1.10 98987 2r0yA 311 57.36 2yziA 138 59.03 2pdrA 149 59.06 2yzqA 282 65.75 1mejA 223 65.77 c.65.1.1 79029 2vjvA 159 66.09 1y0pA 571 67.33 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2qh8A 302 69.84 2px7A 236 70.37 1xkfA 133 77.78 d.37.1.1,d.37.1.1 122077,122078 2nykA 285 79.20 1tq8A 163 79.38 c.26.2.4 107204 1qysA 106 81.37 k.41.1.1 96603 2oh5A 248 82.31 2arfA 165 82.46 2cmxA 118 86.92 2vqcA 118 86.92 1lj1A 571 87.29 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1uehA 253 88.03 c.101.1.1 99259