# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 5.10e-13 d.108.1.1 84979 1yr0A 175 3.09e-12 d.108.1.1 123905 2pdoA 144 3.16e-12 2j8mA 172 8.91e-12 2fiaA 162 8.92e-12 d.108.1.1 133514 1yvoA 172 9.30e-12 d.108.1.1 124106 3c26A 266 1.35e-11 2fl4A 149 1.39e-11 d.108.1.1 133706 2i79A 172 1.50e-11 1u6mA 199 1.61e-11 d.108.1.1 113069 1vhsA 175 1.63e-11 d.108.1.1 100698 1z4eA 153 1.91e-11 d.108.1.1 124431 2ge3A 170 2.80e-11 d.108.1.1 135044 1ufhA 180 3.48e-11 d.108.1.1 88485 2q4vA 170 3.76e-11 d.108.1.1 139878 1on0A 158 4.64e-11 d.108.1.1 87095 2cy2A 174 5.56e-11 d.108.1.1 131016 2r7hA 177 5.77e-11 1s3zA 165 6.02e-11 d.108.1.1 105250 2b5gA 171 7.62e-11 d.108.1.1 127892 2cntA 160 7.90e-11 1qsmA 152 8.13e-11 d.108.1.1 40808 2dxqA 150 8.59e-11 1tiqA 180 1.14e-10 d.108.1.1 107010 2oh1A 179 1.18e-10 2ae6A 166 1.18e-10 d.108.1.1 126600 1wwzA 159 1.19e-10 d.108.1.1 121380 2euiA 153 1.42e-10 d.108.1.1 132387 1vkcA 158 1.64e-10 d.108.1.1 113663 2fe7A 166 1.84e-10 d.108.1.1 133325 1qsoA 149 1.86e-10 d.108.1.1 40812 1y9kA 157 2.18e-10 d.108.1.1 122779 2i6cA 160 2.20e-10 d.108.1.1 137095 1y7rA 133 2.29e-10 d.108.1.1 122716 1i1dA 161 2.91e-10 d.108.1.1 61526 2c27A 315 3.14e-10 d.108.1.1 129659 2ob0A 170 3.46e-10 1l0cA 207 4.73e-10 d.108.1.1 73393 1i21A 159 5.39e-10 d.108.1.1 61549 1bo4A 168 5.89e-10 d.108.1.1 40798 1yvkA 163 5.96e-10 d.108.1.1 124101 2q0yA 153 6.71e-10 1p0hA 318 7.26e-10 d.108.1.1 93866 1i12A 160 7.48e-10 d.108.1.1 61515 1kuxA 207 9.35e-10 d.108.1.1 73021 1cjwA 166 9.37e-10 d.108.1.1 40818 1y9wA 140 9.98e-10 d.108.1.1 122783 1qstA 160 1.03e-09 d.108.1.1 40804 2prbA 196 1.15e-09 2pc1A 201 1.16e-09 1q2yA 140 1.35e-09 d.108.1.1 95655 1gheA 177 1.60e-09 d.108.1.1 76222 2aj6A 159 1.81e-09 d.108.1.1 126841 1yghA 164 1.86e-09 d.108.1.1 40802 5gcnA 166 1.91e-09 d.108.1.1 40807 2reeA 224 1.91e-09 1b6bA 174 3.02e-09 d.108.1.1 40819 2ganA 190 3.66e-09 d.108.1.1 134889 1xebA 150 4.68e-09 d.108.1.1 115219 1z4rA 168 5.58e-09 d.108.1.1 124444 1n71A 180 5.62e-09 d.108.1.1 85370 3blnA 143 5.75e-09 2fiwA 172 6.86e-09 d.108.1.1 133539 1yx0A 159 7.05e-09 d.108.1.1 124168 2g3aA 152 8.50e-09 d.108.1.1 134557 2qecA 204 1.03e-08 2ozgA 396 1.16e-08 2bswA 146 1.34e-08 d.108.1.1 129127 2jdcA 146 1.78e-08 1b87A 181 1.84e-08 d.108.1.1 40797 2atrA 138 3.06e-08 d.108.1.1 127305 1nslA 184 4.61e-08 d.108.1.1 86137 2ozhA 142 5.63e-08 1m4iA 181 9.61e-08 d.108.1.1 74457 2a4nA 182 1.45e-07 d.108.1.1 126159 2fckA 181 2.02e-07 d.108.1.1 133272 1yreA 197 2.07e-07 d.108.1.1 123919 2qmlA 198 2.28e-07 2ft0A 235 2.35e-07 2hv2A 400 3.48e-07 1sqhA 312 4.63e-07 d.108.1.5 98966 2r98A 456 7.21e-07 2o28A 184 7.68e-07 1s7kA 182 9.24e-06 d.108.1.1 118878 2z10A 194 9.91e-06 2i00A 406 1.33e-05 2fsrA 195 1.50e-05 d.108.1.1 134036 1yk3A 210 0.001947 d.108.1.1 123493 2g0bA 198 0.006344 2q04A 211 0.01776 1bob 320 0.09098 1xmtA 103 0.1035 d.108.1.1 115561 1ro5A 201 0.1150 d.108.1.3 105023 1iicA 422 0.1708 d.108.1.2,d.108.1.2 62422,62423 2p0wA 324 0.1800 1nmtA 392 0.1835 d.108.1.2,d.108.1.2 40823,40824 1bobA 320 0.2346 d.108.1.1 40816 2pq8A 278 2.192 2givA 295 5.975 d.108.1.1 135253 2du2A 374 14.60 1yleA 342 15.04 d.108.1.8 123647 2a6mA 155 15.23 d.58.57.1 126287 2f5gA 133 16.58 d.58.57.1 132991 2fyxA 143 18.91 d.58.57.1 134411 2f9sA 151 19.64 c.47.1.10 133168 1qo8A 566 19.66 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1kzfA 230 19.76 d.108.1.3 73354 1vr9A 213 22.56 d.37.1.1,d.37.1.1 120446,120447 2gaeA 346 24.26 2uv4A 152 28.97 1ewjA 126 30.48 d.32.1.2 59526 2yu6A 141 30.92 2d4pA 141 35.71 2hqyA 305 35.89 2ae0X 345 36.93 1jmvA 141 36.98 c.26.2.4 66897 2ef7A 133 40.87 2qh8A 302 42.11 2pd8A 149 45.59 2ariA 39 45.84 1mejA 223 50.18 c.65.1.1 79029 1svjA 156 50.18 d.220.1.1 106049 2cmxA 118 50.61 2vqcA 118 50.61 1ecsA 126 50.98 d.32.1.2 59407 1wqjB 80 52.96 2hxwA 237 53.33 2pdrA 149 55.68 2vjvA 159 61.09 2r0yA 311 65.19 1p2hA 571 65.69 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1st9A 143 67.09 c.47.1.10 98987 2nykA 285 69.09 1xkfA 133 70.69 d.37.1.1,d.37.1.1 122077,122078 1fy7A 278 71.76 d.108.1.1 40817 1tq8A 163 73.83 c.26.2.4 107204 2nliA 368 75.24 1uehA 253 75.46 c.101.1.1 99259 1goxA 369 76.14 c.1.4.1 28607 1zfjA 491 77.10 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2yzqA 282 78.80 2yziA 138 79.13 2bkrA 212 83.83 d.3.1.7 128710 2arfA 165 85.21 2bonA 332 85.86 2oh5A 248 85.92 2zadA 345 88.40