# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 2.16e-12 d.108.1.1 84979 1yr0A 175 2.07e-11 d.108.1.1 123905 1yvoA 172 3.54e-11 d.108.1.1 124106 2j8mA 172 4.54e-11 2i79A 172 7.83e-11 1vhsA 175 1.06e-10 d.108.1.1 100698 2pdoA 144 1.10e-10 3c26A 266 1.45e-10 1wwzA 159 1.80e-10 d.108.1.1 121380 2q4vA 170 1.85e-10 d.108.1.1 139878 1z4eA 153 1.87e-10 d.108.1.1 124431 2fiaA 162 2.30e-10 d.108.1.1 133514 2ge3A 170 2.35e-10 d.108.1.1 135044 2r7hA 177 3.43e-10 1u6mA 199 3.94e-10 d.108.1.1 113069 2oh1A 179 3.99e-10 2cy2A 174 4.77e-10 d.108.1.1 131016 2i6cA 160 4.89e-10 d.108.1.1 137095 1s3zA 165 6.13e-10 d.108.1.1 105250 1tiqA 180 8.65e-10 d.108.1.1 107010 1qsmA 152 8.77e-10 d.108.1.1 40808 1on0A 158 1.02e-09 d.108.1.1 87095 2dxqA 150 1.10e-09 2cntA 160 1.19e-09 1ufhA 180 1.42e-09 d.108.1.1 88485 2ob0A 170 1.68e-09 1p0hA 318 1.76e-09 d.108.1.1 93866 2c27A 315 1.87e-09 d.108.1.1 129659 1y9kA 157 2.33e-09 d.108.1.1 122779 1l0cA 207 2.42e-09 d.108.1.1 73393 1cjwA 166 2.49e-09 d.108.1.1 40818 1kuxA 207 2.85e-09 d.108.1.1 73021 1vkcA 158 2.95e-09 d.108.1.1 113663 2b5gA 171 3.02e-09 d.108.1.1 127892 1qsoA 149 3.27e-09 d.108.1.1 40812 2euiA 153 3.48e-09 d.108.1.1 132387 2ae6A 166 4.74e-09 d.108.1.1 126600 1qstA 160 4.75e-09 d.108.1.1 40804 2pc1A 201 5.02e-09 2fl4A 149 5.49e-09 d.108.1.1 133706 5gcnA 166 5.61e-09 d.108.1.1 40807 1gheA 177 7.98e-09 d.108.1.1 76222 1i1dA 161 8.57e-09 d.108.1.1 61526 1yghA 164 8.65e-09 d.108.1.1 40802 2q0yA 153 9.13e-09 1q2yA 140 1.05e-08 d.108.1.1 95655 1yvkA 163 1.13e-08 d.108.1.1 124101 1i21A 159 1.20e-08 d.108.1.1 61549 1b6bA 174 1.31e-08 d.108.1.1 40819 2prbA 196 1.46e-08 2fe7A 166 1.65e-08 d.108.1.1 133325 2reeA 224 2.05e-08 1y7rA 133 2.14e-08 d.108.1.1 122716 1n71A 180 3.15e-08 d.108.1.1 85370 1i12A 160 3.19e-08 d.108.1.1 61515 2bswA 146 3.54e-08 d.108.1.1 129127 1xebA 150 3.55e-08 d.108.1.1 115219 1yx0A 159 3.76e-08 d.108.1.1 124168 2jdcA 146 3.77e-08 1bo4A 168 4.49e-08 d.108.1.1 40798 2ganA 190 4.87e-08 d.108.1.1 134889 2qecA 204 5.14e-08 1nslA 184 8.78e-08 d.108.1.1 86137 2fiwA 172 8.78e-08 d.108.1.1 133539 3blnA 143 1.07e-07 1z4rA 168 1.57e-07 d.108.1.1 124444 1yreA 197 1.69e-07 d.108.1.1 123919 1y9wA 140 2.15e-07 d.108.1.1 122783 2aj6A 159 2.49e-07 d.108.1.1 126841 1b87A 181 2.71e-07 d.108.1.1 40797 2a4nA 182 3.95e-07 d.108.1.1 126159 1m4iA 181 5.26e-07 d.108.1.1 74457 2ozgA 396 5.74e-07 2fckA 181 5.92e-07 d.108.1.1 133272 2qmlA 198 8.70e-07 2g3aA 152 8.98e-07 d.108.1.1 134557 2ozhA 142 2.04e-06 2atrA 138 2.07e-06 d.108.1.1 127305 2fsrA 195 5.58e-06 d.108.1.1 134036 2r98A 456 5.62e-06 2hv2A 400 7.56e-06 1sqhA 312 7.89e-06 d.108.1.5 98966 2o28A 184 1.09e-05 2ft0A 235 1.33e-05 1s7kA 182 1.39e-05 d.108.1.1 118878 2z10A 194 1.92e-05 2i00A 406 0.000698 2g0bA 198 0.003681 1yk3A 210 0.006190 d.108.1.1 123493 2q04A 211 0.02564 1iicA 422 0.09037 d.108.1.2,d.108.1.2 62422,62423 1nmtA 392 0.1807 d.108.1.2,d.108.1.2 40823,40824 1bob 320 0.2747 1bobA 320 0.4436 d.108.1.1 40816 2p0wA 324 0.4838 1xmtA 103 0.6787 d.108.1.1 115561 1ro5A 201 1.110 d.108.1.3 105023 2pq8A 278 3.188 2hqyA 305 4.336 2givA 295 7.136 d.108.1.1 135253 1fy7A 278 30.04 d.108.1.1 40817 1wkbA 810 47.46 2qh8A 302 47.84 1atg 231 54.87 1yleA 342 55.53 d.108.1.8 123647 1sv6A 269 56.80 d.177.1.1 106043 1ta9A 450 60.78 1ewjA 126 63.01 d.32.1.2 59526 1goxA 369 63.11 c.1.4.1 28607 3cbtA 237 64.52 1wwrA 171 66.51 c.97.1.2 121366 2eb4A 267 68.48 2g84A 197 69.73 c.97.1.2 134766 1ecsA 126 71.57 d.32.1.2 59407 2du2A 374 81.59 1vr9A 213 83.74 d.37.1.1,d.37.1.1 120446,120447 1qo8A 566 85.67 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2d4pA 141 87.70