# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 5.90e-14 d.108.1.1 84979 1yr0A 175 2.39e-13 d.108.1.1 123905 2j8mA 172 3.22e-13 1yvoA 172 4.55e-13 d.108.1.1 124106 1vhsA 175 1.60e-12 d.108.1.1 100698 2i79A 172 1.88e-12 2fiaA 162 1.96e-12 d.108.1.1 133514 2ge3A 170 2.35e-12 d.108.1.1 135044 2pdoA 144 3.22e-12 2q4vA 170 5.01e-12 d.108.1.1 139878 1u6mA 199 6.34e-12 d.108.1.1 113069 1z4eA 153 7.42e-12 d.108.1.1 124431 3c26A 266 7.62e-12 2r7hA 177 1.08e-11 1qsmA 152 1.39e-11 d.108.1.1 40808 2cy2A 174 1.42e-11 d.108.1.1 131016 2i6cA 160 1.47e-11 d.108.1.1 137095 1wwzA 159 1.55e-11 d.108.1.1 121380 2dxqA 150 2.11e-11 1qsoA 149 3.75e-11 d.108.1.1 40812 2euiA 153 3.81e-11 d.108.1.1 132387 2cntA 160 4.13e-11 1tiqA 180 4.30e-11 d.108.1.1 107010 2oh1A 179 4.45e-11 1ufhA 180 4.64e-11 d.108.1.1 88485 1on0A 158 4.97e-11 d.108.1.1 87095 1vkcA 158 5.12e-11 d.108.1.1 113663 1s3zA 165 5.13e-11 d.108.1.1 105250 2ob0A 170 5.71e-11 2ae6A 166 5.92e-11 d.108.1.1 126600 2fl4A 149 6.18e-11 d.108.1.1 133706 2b5gA 171 8.03e-11 d.108.1.1 127892 1l0cA 207 9.81e-11 d.108.1.1 73393 1y7rA 133 1.15e-10 d.108.1.1 122716 1cjwA 166 1.50e-10 d.108.1.1 40818 1bo4A 168 1.53e-10 d.108.1.1 40798 2fe7A 166 1.57e-10 d.108.1.1 133325 1i1dA 161 1.66e-10 d.108.1.1 61526 1i21A 159 2.09e-10 d.108.1.1 61549 1kuxA 207 2.40e-10 d.108.1.1 73021 2q0yA 153 2.44e-10 1y9kA 157 2.44e-10 d.108.1.1 122779 2reeA 224 2.60e-10 2c27A 315 3.18e-10 d.108.1.1 129659 1gheA 177 3.98e-10 d.108.1.1 76222 1p0hA 318 4.57e-10 d.108.1.1 93866 5gcnA 166 4.66e-10 d.108.1.1 40807 1yghA 164 4.88e-10 d.108.1.1 40802 1i12A 160 5.32e-10 d.108.1.1 61515 1b6bA 174 5.51e-10 d.108.1.1 40819 1yvkA 163 6.09e-10 d.108.1.1 124101 1xebA 150 6.23e-10 d.108.1.1 115219 1q2yA 140 6.60e-10 d.108.1.1 95655 1qstA 160 7.02e-10 d.108.1.1 40804 2pc1A 201 7.98e-10 1y9wA 140 8.86e-10 d.108.1.1 122783 2prbA 196 9.70e-10 2jdcA 146 1.23e-09 2bswA 146 1.57e-09 d.108.1.1 129127 1yx0A 159 2.28e-09 d.108.1.1 124168 2ganA 190 3.21e-09 d.108.1.1 134889 1n71A 180 3.27e-09 d.108.1.1 85370 1z4rA 168 4.84e-09 d.108.1.1 124444 2aj6A 159 4.95e-09 d.108.1.1 126841 2fiwA 172 7.76e-09 d.108.1.1 133539 2ozgA 396 8.80e-09 3blnA 143 8.86e-09 2qecA 204 1.22e-08 1nslA 184 1.37e-08 d.108.1.1 86137 2g3aA 152 2.80e-08 d.108.1.1 134557 2atrA 138 2.90e-08 d.108.1.1 127305 1b87A 181 4.38e-08 d.108.1.1 40797 2fckA 181 4.71e-08 d.108.1.1 133272 1m4iA 181 5.00e-08 d.108.1.1 74457 2a4nA 182 1.32e-07 d.108.1.1 126159 2hv2A 400 1.49e-07 1yreA 197 1.69e-07 d.108.1.1 123919 2r98A 456 1.71e-07 2ozhA 142 2.09e-07 2fsrA 195 5.27e-07 d.108.1.1 134036 2qmlA 198 6.61e-07 2ft0A 235 1.09e-06 1sqhA 312 1.19e-06 d.108.1.5 98966 2o28A 184 4.93e-06 1s7kA 182 5.52e-06 d.108.1.1 118878 2z10A 194 7.02e-06 2i00A 406 1.33e-05 2g0bA 198 0.005395 1yk3A 210 0.007355 d.108.1.1 123493 2q04A 211 0.01796 1iicA 422 0.05870 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.06250 1ro5A 201 0.07950 d.108.1.3 105023 1xmtA 103 0.1285 d.108.1.1 115561 1bobA 320 0.2530 d.108.1.1 40816 2p0wA 324 0.2801 1nmtA 392 0.4444 d.108.1.2,d.108.1.2 40823,40824 2pq8A 278 1.159 1yleA 342 3.958 d.108.1.8 123647 2givA 295 5.845 d.108.1.1 135253 2du2A 374 14.74 2f9sA 151 16.41 c.47.1.10 133168 1goxA 369 17.04 c.1.4.1 28607 2hqyA 305 19.21 1svjA 156 20.67 d.220.1.1 106049 1kzfA 230 20.80 d.108.1.3 73354 2g84A 197 23.35 c.97.1.2 134766 1fy7A 278 31.79 d.108.1.1 40817 1ewjA 126 34.57 d.32.1.2 59526 2yu6A 141 34.72 2d4pA 141 36.52 2nliA 368 41.07 1sv6A 269 43.88 d.177.1.1 106043 2nzlA 392 46.35 2bw3A 534 49.88 a.270.1.1,c.55.3.12 129317,129318 1vr9A 213 51.71 d.37.1.1,d.37.1.1 120446,120447 1wwrA 171 56.71 c.97.1.2 121366 1uehA 253 59.68 c.101.1.1 99259 1s95A 333 60.63 d.159.1.3 105375 1st9A 143 60.72 c.47.1.10 98987 2dkb 433 62.09 2bkrA 212 63.30 d.3.1.7 128710 2rduA 387 64.31 1qo8A 566 65.29 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1jmvA 141 65.92 c.26.2.4 66897 1p4cA 380 72.22 c.1.4.1 94100 2uv4A 152 72.80 1sqwA 188 76.48 b.122.1.1,d.17.6.3 119033,119034 2pd8A 149 77.22 1ei6A 406 78.58 c.76.1.4 90443 1tbgA 340 79.93 b.69.4.1 27649 2pdrA 149 81.91 3cbtA 237 82.32