# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mk4A 157 1.40e-12 d.108.1.1 84979 1yvoA 172 9.14e-12 d.108.1.1 124106 1yr0A 175 1.23e-11 d.108.1.1 123905 1z4eA 153 1.67e-11 d.108.1.1 124431 2j8mA 172 1.83e-11 2ge3A 170 2.28e-11 d.108.1.1 135044 2pdoA 144 3.23e-11 1vhsA 175 5.73e-11 d.108.1.1 100698 1s3zA 165 6.47e-11 d.108.1.1 105250 1tiqA 180 7.24e-11 d.108.1.1 107010 2ob0A 170 8.77e-11 2r7hA 177 1.03e-10 2dxqA 150 1.38e-10 2oh1A 179 1.95e-10 2cy2A 174 4.62e-10 d.108.1.1 131016 2fiaA 162 4.91e-10 d.108.1.1 133514 2i79A 172 5.75e-10 2fe7A 166 6.14e-10 d.108.1.1 133325 2euiA 153 6.67e-10 d.108.1.1 132387 2cntA 160 7.33e-10 1u6mA 199 1.86e-09 d.108.1.1 113069 2q4vA 170 2.14e-09 d.108.1.1 139878 2ae6A 166 2.19e-09 d.108.1.1 126600 2prbA 196 2.67e-09 1l0cA 207 2.83e-09 d.108.1.1 73393 1cjwA 166 3.40e-09 d.108.1.1 40818 1gheA 177 3.62e-09 d.108.1.1 76222 1kuxA 207 3.67e-09 d.108.1.1 73021 1wwzA 159 3.78e-09 d.108.1.1 121380 1i21A 159 4.35e-09 d.108.1.1 61549 1qsmA 152 4.46e-09 d.108.1.1 40808 2fiwA 172 5.02e-09 d.108.1.1 133539 1p0hA 318 5.18e-09 d.108.1.1 93866 1on0A 158 5.36e-09 d.108.1.1 87095 2i6cA 160 6.24e-09 d.108.1.1 137095 2qecA 204 8.14e-09 1ufhA 180 1.06e-08 d.108.1.1 88485 1qstA 160 1.08e-08 d.108.1.1 40804 1i1dA 161 1.18e-08 d.108.1.1 61526 2pc1A 201 1.65e-08 1yreA 197 2.00e-08 d.108.1.1 123919 1i12A 160 2.10e-08 d.108.1.1 61515 2fckA 181 2.39e-08 d.108.1.1 133272 1qsoA 149 2.54e-08 d.108.1.1 40812 2c27A 315 3.96e-08 d.108.1.1 129659 3c26A 266 4.43e-08 2q0yA 153 5.26e-08 1vkcA 158 5.45e-08 d.108.1.1 113663 1nslA 184 6.30e-08 d.108.1.1 86137 2reeA 224 8.76e-08 3blnA 143 1.14e-07 2b5gA 171 1.19e-07 d.108.1.1 127892 2r98A 456 1.32e-07 2z10A 194 1.95e-07 2bswA 146 1.98e-07 d.108.1.1 129127 1xebA 150 2.09e-07 d.108.1.1 115219 2fsrA 195 2.23e-07 d.108.1.1 134036 2fl4A 149 2.73e-07 d.108.1.1 133706 2jdcA 146 3.44e-07 1yvkA 163 3.74e-07 d.108.1.1 124101 1b6bA 174 3.77e-07 d.108.1.1 40819 1y9kA 157 4.28e-07 d.108.1.1 122779 1z4rA 168 4.98e-07 d.108.1.1 124444 2ozgA 396 5.40e-07 1sqhA 312 6.90e-07 d.108.1.5 98966 1y7rA 133 1.51e-06 d.108.1.1 122716 1n71A 180 1.81e-06 d.108.1.1 85370 1q2yA 140 2.34e-06 d.108.1.1 95655 2a4nA 182 2.41e-06 d.108.1.1 126159 2qmlA 198 3.57e-06 2ft0A 235 4.86e-06 2g3aA 152 5.00e-06 d.108.1.1 134557 1yghA 164 5.56e-06 d.108.1.1 40802 1m4iA 181 6.30e-06 d.108.1.1 74457 1y9wA 140 7.50e-06 d.108.1.1 122783 1yx0A 159 7.55e-06 d.108.1.1 124168 1s7kA 182 1.03e-05 d.108.1.1 118878 2ganA 190 1.14e-05 d.108.1.1 134889 2o28A 184 1.23e-05 5gcnA 166 2.57e-05 d.108.1.1 40807 2aj6A 159 3.19e-05 d.108.1.1 126841 1yk3A 210 4.14e-05 d.108.1.1 123493 1b87A 181 4.22e-05 d.108.1.1 40797 2hv2A 400 4.56e-05 1bo4A 168 5.44e-05 d.108.1.1 40798 2ozhA 142 7.99e-05 2atrA 138 0.000170 d.108.1.1 127305 2i00A 406 0.000946 1yleA 342 0.003085 d.108.1.8 123647 1nmtA 392 0.006752 d.108.1.2,d.108.1.2 40823,40824 2d4pA 141 0.007011 2q04A 211 0.007150 1ro5A 201 0.01817 d.108.1.3 105023 1bobA 320 0.04452 d.108.1.1 40816 1bob 320 0.04629 1iicA 422 0.05376 d.108.1.2,d.108.1.2 62422,62423 2g0bA 198 0.1296 1lrzA 426 0.1484 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1kzfA 230 0.1524 d.108.1.3 73354 2uubK 129 0.4690 c.55.4.1 139942 1xmtA 103 0.6307 d.108.1.1 115561 2vqeK 129 0.9106 2hqyA 305 4.312 1pda 315 7.145 1fjgK 129 7.760 c.55.4.1 33733 2ehzA 302 10.33 2givA 295 10.74 d.108.1.1 135253 2pq8A 278 13.75 1lkdA 297 15.07 d.32.1.3,d.32.1.3 78059,78060 2fr1A 486 15.11 c.2.1.2,c.2.1.2 133961,133962 1g8fA 511 17.48 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1wuaA 375 19.46 c.55.1.1,c.55.1.1 121281,121282 1mpyA 307 21.07 d.32.1.3,d.32.1.3 38508,38509 2zadA 345 24.72 1r6xA 395 25.58 b.122.1.3,c.26.1.5 97167,97168 1nuiA 255 26.16 e.13.1.2,g.41.3.2 86194,86195 2b8eA 273 28.44 c.108.1.7,d.220.1.1 128068,128069 1yagA 375 30.00 c.55.1.1,c.55.1.1 33449,33450 2he7A 283 30.78 1nv8A 284 30.89 c.66.1.30 86224 2btfA 375 31.80 c.55.1.1,c.55.1.1 33429,33430 1kw3B 292 31.92 d.32.1.3,d.32.1.3 77549,77550 2nycA 144 32.49 d.37.1.1 138812 1han 297 34.07 2hfnA 153 36.03 2p0wA 324 36.69 1gtkA 313 39.46 c.94.1.1,d.50.2.1 76346,76347 2fxuA 375 43.92 c.55.1.1,c.55.1.1 134340,134341 2j41A 207 47.36 2qo3A 915 48.97 2o16A 160 50.68 d.37.1.1,d.37.1.1 138869,138870 2gl6A 392 59.09 2f1fA 164 59.81 d.58.18.6,d.58.18.6 132760,132761 1h4vB 421 60.00 c.51.1.1,d.104.1.1 60624,60625 2uv4A 152 60.57 2hl0A 143 63.64 1acf 125 65.23 2gsaA 432 65.91 c.67.1.4 34446 1apyA 162 66.25 d.153.1.5 42004 1x0pA 143 67.02 d.58.10.2 121552 1k8kA 418 69.19 c.55.1.1,c.55.1.1 68305,68306 1d4xA 375 69.53 c.55.1.1,c.55.1.1 59107,59108 2arhA 203 70.80 d.108.1.9 127197 1fy7A 278 73.91 d.108.1.1 40817 2gq0A 303 74.21 2yvyA 278 77.20 2i5eA 211 79.13 1atnA 373 79.60 c.55.1.1,c.55.1.1 33437,33438 2bsnA 145 80.12 2b2nA 344 80.81 c.37.1.19 127710 3bzyB 83 82.82 1zfjA 491 82.83 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2ef0A 301 84.51 3bfmA 235 84.57 1cbyA 259 87.50 d.103.1.1 40705 2arfA 165 87.95