# List of top-scoring protein chains for T0417.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vhsA 175 1.36e-11 d.108.1.1 100698 1yr0A 175 7.07e-11 d.108.1.1 123905 1nslA 184 1.16e-10 d.108.1.1 86137 1s7fA 199 1.51e-10 d.108.1.1 118877 1s7kA 182 2.41e-10 d.108.1.1 118878 1z9uA 179 2.93e-10 d.108.1.1 124770 2j8mA 172 3.26e-10 1yvoA 172 3.43e-10 d.108.1.1 124106 2pdoA 144 3.75e-10 2ge3A 170 4.56e-10 d.108.1.1 135044 2fe7A 166 1.35e-09 d.108.1.1 133325 2jevA 174 2.03e-09 d.108.1.1 138287 2prbA 196 2.05e-09 2cy2A 174 2.11e-09 d.108.1.1 131016 2fckA 181 2.22e-09 d.108.1.1 133272 2g3tA 179 2.56e-09 d.108.1.1 134572 2b5gA 171 2.74e-09 d.108.1.1 127892 2b5gB 171 2.77e-09 d.108.1.1 127893 2b3uA 171 3.21e-09 d.108.1.1 127797 2fxfA 170 3.63e-09 d.108.1.1 134308 2pr8A 196 4.19e-09 1z4eA 153 5.82e-09 d.108.1.1 124431 2ae6A 166 7.17e-09 d.108.1.1 126600 2fsrA 195 7.79e-09 d.108.1.1 134036 2i79A 172 9.05e-09 2q4vA 170 1.46e-08 d.108.1.1 139878 1s3zA 165 1.90e-08 d.108.1.1 105250 1i1dA 161 3.56e-08 d.108.1.1 61526 1i12A 160 3.69e-08 d.108.1.1 61515 1i21A 159 3.96e-08 d.108.1.1 61549 1wwzA 159 5.20e-08 d.108.1.1 121380 2dxqA 150 6.77e-08 1tiqA 180 8.86e-08 d.108.1.1 107010 1yreA 197 9.77e-08 d.108.1.1 123919 1mk4A 157 1.27e-07 d.108.1.1 84979 2euiA 153 3.45e-07 d.108.1.1 132387 1u6mA 199 1.25e-06 d.108.1.1 113069 1vkcA 158 1.32e-06 d.108.1.1 113663 2o28A 184 1.41e-06 1ufhA 180 1.80e-06 d.108.1.1 88485 2cntA 160 2.59e-06 3c26A 266 2.99e-06 1qsmA 152 3.01e-06 d.108.1.1 40808 1qsoA 149 3.21e-06 d.108.1.1 40812 2aj6A 159 3.32e-06 d.108.1.1 126841 2i6cA 160 3.32e-06 d.108.1.1 137095 2z10A 194 3.59e-06 1on0A 158 3.63e-06 d.108.1.1 87095 2z0zA 194 4.45e-06 2fiwA 172 5.91e-06 d.108.1.1 133539 2fiaA 162 5.99e-06 d.108.1.1 133514 2fl4A 149 6.95e-06 d.108.1.1 133706 2q0yA 153 6.95e-06 2ob0A 170 8.91e-06 1y9kA 157 9.14e-06 d.108.1.1 122779 1bo4A 168 1.02e-05 d.108.1.1 40798 2r98A 456 1.12e-05 2pc1A 201 1.14e-05 2reeA 224 1.28e-05 1ib1E 200 2.43e-05 d.108.1.1 62137 1kuxA 207 2.44e-05 d.108.1.1 73021 1l0cA 207 2.74e-05 d.108.1.1 73393 1b6bA 174 2.77e-05 d.108.1.1 40819 1cjwA 166 2.85e-05 d.108.1.1 40818 3blnA 143 2.87e-05 1qstA 160 5.63e-05 d.108.1.1 40804 5gcnA 166 5.66e-05 d.108.1.1 40807 1m1dA 163 5.74e-05 d.108.1.1 78397 1n71A 180 5.75e-05 d.108.1.1 85370 1qsrA 162 5.77e-05 d.108.1.1 40805 1b87A 181 5.79e-05 d.108.1.1 40797 2a4nA 182 5.81e-05 d.108.1.1 126159 2q7bA 181 6.62e-05 2r1iA 172 8.22e-05 1gheA 177 8.58e-05 d.108.1.1 76222 2ozhA 142 0.000110 1yvkA 163 0.000129 d.108.1.1 124101 1q2yA 140 0.000196 d.108.1.1 95655 2qmlA 198 0.000197 2qecA 204 0.000198 2r7hA 177 0.000208 2ganA 190 0.000212 d.108.1.1 134889 1yx0A 159 0.000218 d.108.1.1 124168 1y9wA 140 0.000370 d.108.1.1 122783 2atrA 138 0.000424 d.108.1.1 127305 2g3aA 152 0.000740 d.108.1.1 134557 1y7rA 133 0.000752 d.108.1.1 122716 1xebA 150 0.000822 d.108.1.1 115219 1cm0A 168 0.000934 d.108.1.1 40800 1yghA 164 0.000986 d.108.1.1 40802 2oh1A 179 0.001428 1z4rA 168 0.001533 d.108.1.1 124444 2jdcA 146 0.001748 2ft0A 235 0.002144 1p0hA 318 0.004084 d.108.1.1 93866 2c27A 315 0.004095 d.108.1.1 129659 1sqhA 312 0.007401 d.108.1.5 98966 2pr1A 163 0.01148 1iykA 392 0.01412 d.108.1.2,d.108.1.2 76958,76959 2ozgA 396 0.06239 2q04A 211 0.07607 1yk3A 210 0.07950 d.108.1.1 123493 2i00A 406 0.09635 1r57A 102 0.1211 d.108.1.1 97080 1bobA 320 0.1283 d.108.1.1 40816 1yleA 342 0.1504 d.108.1.8 123647 1rxtA 496 0.1521 d.108.1.2,d.108.1.2 118793,118794 1m4iA 181 0.1635 d.108.1.1 74457 2hv2A 400 0.3197 2p6eA 455 1.042 1iicA 422 1.095 d.108.1.2,d.108.1.2 62422,62423 2rc4A 287 2.414 2ozuA 284 2.720 d.108.1.1 139451 1mjbA 278 2.814 d.108.1.1 79192 1fy7A 278 2.869 d.108.1.1 40817 1mjaA 278 3.385 d.108.1.1 79191 1mj9A 278 3.675 d.108.1.1 79190 2p0wA 324 6.356 2pq8A 278 7.709 2givA 295 13.91 d.108.1.1 135253 2zbkA 389 26.13 1ml4A 308 34.62 c.78.1.1,c.78.1.1 79255,79256 2bhmA 164 46.77 1lvwA 295 59.43 c.68.1.6 84723 2d4oA 141 61.59 1i8kA 107 69.14 b.1.1.1 71130 1wwkA 307 80.46 2d4pA 141 88.88