# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 6.88e-17 d.108.1.1 123919 1nslA 184 1.42e-16 d.108.1.1 86137 2z10A 194 2.20e-16 2fckA 181 2.61e-16 d.108.1.1 133272 2fsrA 195 2.87e-16 d.108.1.1 134036 2oh1A 179 5.00e-16 2ge3A 170 9.60e-16 d.108.1.1 135044 1s7kA 182 1.18e-15 d.108.1.1 118878 1vhsA 175 1.64e-15 d.108.1.1 100698 1yk3A 210 1.72e-15 d.108.1.1 123493 1qsmA 152 1.73e-15 d.108.1.1 40808 2prbA 196 1.87e-15 2r1iA 172 2.39e-15 2j8mA 172 2.45e-15 2qmlA 198 2.89e-15 2b5gA 171 2.95e-15 d.108.1.1 127892 2fe7A 166 3.71e-15 d.108.1.1 133325 2fl4A 149 4.32e-15 d.108.1.1 133706 1yr0A 175 4.87e-15 d.108.1.1 123905 2cy2A 174 5.16e-15 d.108.1.1 131016 1yvoA 172 5.29e-15 d.108.1.1 124106 2fiaA 162 5.69e-15 d.108.1.1 133514 1mk4A 157 6.53e-15 d.108.1.1 84979 1s3zA 165 6.55e-15 d.108.1.1 105250 2ob0A 170 6.99e-15 2ae6A 166 7.10e-15 d.108.1.1 126600 1tiqA 180 8.86e-15 d.108.1.1 107010 2i6cA 160 1.07e-14 d.108.1.1 137095 1gheA 177 1.65e-14 d.108.1.1 76222 1on0A 158 1.65e-14 d.108.1.1 87095 2pdoA 144 1.79e-14 1u6mA 199 2.02e-14 d.108.1.1 113069 2i79A 172 2.78e-14 1z4eA 153 2.86e-14 d.108.1.1 124431 2dxqA 150 2.99e-14 2euiA 153 3.42e-14 d.108.1.1 132387 2cntA 160 3.60e-14 2q4vA 170 3.69e-14 d.108.1.1 139878 2pc1A 201 4.54e-14 2hv2A 400 4.78e-14 1sqhA 312 4.80e-14 d.108.1.5 98966 2o28A 184 5.07e-14 2r7hA 177 5.90e-14 1xebA 150 8.16e-14 d.108.1.1 115219 3c26A 266 8.79e-14 1z4rA 168 1.22e-13 d.108.1.1 124444 2reeA 224 1.32e-13 1cjwA 166 1.40e-13 d.108.1.1 40818 2i00A 406 1.75e-13 1l0cA 207 2.17e-13 d.108.1.1 73393 1yghA 164 2.33e-13 d.108.1.1 40802 1wwzA 159 2.41e-13 d.108.1.1 121380 1i1dA 161 2.92e-13 d.108.1.1 61526 2ft0A 235 3.47e-13 1qstA 160 3.55e-13 d.108.1.1 40804 2jdcA 146 3.66e-13 1y9kA 157 3.71e-13 d.108.1.1 122779 1i12A 160 3.91e-13 d.108.1.1 61515 1kuxA 207 4.04e-13 d.108.1.1 73021 1yvkA 163 5.03e-13 d.108.1.1 124101 3blnA 143 5.19e-13 2bswA 146 5.35e-13 d.108.1.1 129127 2q0yA 153 5.48e-13 2fiwA 172 6.29e-13 d.108.1.1 133539 2qecA 204 6.75e-13 2ganA 190 7.19e-13 d.108.1.1 134889 2ozgA 396 8.25e-13 2ozhA 142 9.07e-13 1y7rA 133 9.33e-13 d.108.1.1 122716 1q2yA 140 9.57e-13 d.108.1.1 95655 1vkcA 158 1.33e-12 d.108.1.1 113663 2atrA 138 2.12e-12 d.108.1.1 127305 2c27A 315 2.96e-12 d.108.1.1 129659 1n71A 180 3.45e-12 d.108.1.1 85370 1p0hA 318 4.44e-12 d.108.1.1 93866 1y9wA 140 6.43e-12 d.108.1.1 122783 1m4iA 181 7.45e-12 d.108.1.1 74457 2g3aA 152 1.92e-11 d.108.1.1 134557 1bo4A 168 1.95e-11 d.108.1.1 40798 1yx0A 159 2.41e-11 d.108.1.1 124168 2g0bA 198 1.96e-08 2r98A 456 1.21e-07 1ro5A 201 7.91e-07 d.108.1.3 105023 1kzfA 230 1.83e-05 d.108.1.3 73354 2aj6A 159 2.22e-05 d.108.1.1 126841 2q04A 211 0.000271 1ne9A 335 0.000463 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.000775 d.108.1.8 123647 1iicA 422 0.004643 d.108.1.2,d.108.1.2 62422,62423 2givA 295 0.1734 d.108.1.1 135253 1xmtA 103 0.3529 d.108.1.1 115561 1fy7A 278 0.3712 d.108.1.1 40817 1lrzA 426 0.3871 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2pq8A 278 0.6045 1bob 320 1.001 1bobA 320 3.154 d.108.1.1 40816 1l3kA 196 6.694 d.58.7.1,d.58.7.1 73539,73540 1nuiA 255 10.06 e.13.1.2,g.41.3.2 86194,86195 1svjA 156 13.21 d.220.1.1 106049 1tuhA 156 18.71 d.17.4.11 107345 2b8eA 273 20.32 c.108.1.7,d.220.1.1 128068,128069 1dd9A 338 25.00 e.13.1.1 43254 1zfjA 491 31.46 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2citA 282 32.59 c.1.8.3 130499 2c42A 1231 33.45 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2dnjA 260 33.53 d.151.1.1 41790 1y791 680 33.75 3c8cA 240 34.95 1yloA 348 35.35 b.49.3.1,c.56.5.4 123659,123660 1r6xA 395 35.51 b.122.1.3,c.26.1.5 97167,97168 2r85A 334 35.90 1bywA 110 36.22 d.110.3.6 40912 1tkeA 224 38.64 d.15.10.1,d.67.1.1 112470,112471 1tca 317 38.88 2p0wA 324 39.71 2ywkA 95 41.97 1q0eA 152 45.41 b.1.8.1 95504 2ouxA 286 45.79 1nmsA 249 46.38 c.17.1.1 85879 2qkpA 151 46.72 1pzsA 208 47.88 b.1.8.1 104397 2hvwA 184 50.45 2b25A 336 51.91 c.66.1.13 127699 2qfjA 216 52.36 2yvyA 278 53.40 1pvmA 184 54.57 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2h30A 164 54.89 2cxaA 256 55.63 d.108.1.6 130993 1gsaA 316 55.73 c.30.1.3,d.142.1.1 31718,41477 2bngA 149 56.75 2hk9A 275 56.91 1e9pA 151 57.29 b.1.8.1 22215 2ootA 709 58.66 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1oalA 151 62.03 b.1.8.1 86739 2nycA 144 63.15 d.37.1.1 138812 1xtmA 175 63.90 1zh5A 195 65.04 a.4.5.46,d.58.7.1 125073,125074 2qggA 182 65.06 1ru8A 232 66.39 c.26.2.1 97849 1f1gA 154 66.50 b.1.8.1 76153 2p9mA 138 66.77 1u4nA 310 67.07 c.69.1.2 113021 2pblA 262 67.92 2awpA 198 70.97 1esoA 154 71.00 b.1.8.1 22293 1mngA 203 71.19 a.2.11.1,d.44.1.1 15776,38701 1kkcA 221 73.69 a.2.11.1,d.44.1.1 68660,68661 1s4iA 175 74.72 1fxlA 167 75.14 d.58.7.1,d.58.7.1 39183,39184 1iscA 192 78.18 a.2.11.1,d.44.1.1 15733,38726 2k0mA 104 78.82 1jm1A 204 79.74 b.33.1.1 71745 1o54A 277 79.96 c.66.1.13 92482 1pu1A 94 80.51 d.266.1.1 104307 1rjdA 334 82.06 c.66.1.37 97558 3b4dA 96 82.32 1mfmA 153 82.85 b.1.8.1 22246 1bx4A 345 83.17 c.72.1.1 34935 2epjA 434 83.32 2yziA 138 88.47 1vkhA 273 89.17 c.69.1.32 108662