# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 7.89e-16 d.108.1.1 123919 1nslA 184 9.67e-16 d.108.1.1 86137 2z10A 194 1.32e-15 2fckA 181 2.34e-15 d.108.1.1 133272 2fsrA 195 6.45e-15 d.108.1.1 134036 2oh1A 179 8.94e-15 1s7kA 182 9.46e-15 d.108.1.1 118878 2ge3A 170 1.09e-14 d.108.1.1 135044 1yk3A 210 1.22e-14 d.108.1.1 123493 1vhsA 175 1.89e-14 d.108.1.1 100698 2prbA 196 2.27e-14 2r1iA 172 2.30e-14 1qsmA 152 2.90e-14 d.108.1.1 40808 2qmlA 198 3.75e-14 2ob0A 170 3.86e-14 2fe7A 166 4.34e-14 d.108.1.1 133325 2fiaA 162 4.74e-14 d.108.1.1 133514 2b5gA 171 4.82e-14 d.108.1.1 127892 2j8mA 172 4.93e-14 1yr0A 175 5.12e-14 d.108.1.1 123905 2fl4A 149 5.75e-14 d.108.1.1 133706 2cy2A 174 5.92e-14 d.108.1.1 131016 1tiqA 180 6.76e-14 d.108.1.1 107010 1s3zA 165 7.08e-14 d.108.1.1 105250 2ae6A 166 7.21e-14 d.108.1.1 126600 1yvoA 172 9.82e-14 d.108.1.1 124106 1mk4A 157 9.90e-14 d.108.1.1 84979 2i6cA 160 1.02e-13 d.108.1.1 137095 1gheA 177 1.35e-13 d.108.1.1 76222 1u6mA 199 1.42e-13 d.108.1.1 113069 1on0A 158 1.54e-13 d.108.1.1 87095 2pdoA 144 1.72e-13 2dxqA 150 1.88e-13 1z4eA 153 2.05e-13 d.108.1.1 124431 2cntA 160 2.21e-13 2i79A 172 2.24e-13 2euiA 153 2.31e-13 d.108.1.1 132387 1sqhA 312 2.46e-13 d.108.1.5 98966 2pc1A 201 2.95e-13 2r7hA 177 3.65e-13 2q4vA 170 3.89e-13 d.108.1.1 139878 2o28A 184 4.34e-13 2hv2A 400 4.87e-13 1xebA 150 7.47e-13 d.108.1.1 115219 1cjwA 166 8.68e-13 d.108.1.1 40818 2i00A 406 1.02e-12 1z4rA 168 1.07e-12 d.108.1.1 124444 3c26A 266 1.10e-12 1wwzA 159 1.21e-12 d.108.1.1 121380 2reeA 224 1.59e-12 1i1dA 161 1.99e-12 d.108.1.1 61526 1yvkA 163 2.11e-12 d.108.1.1 124101 1yghA 164 2.28e-12 d.108.1.1 40802 1l0cA 207 2.34e-12 d.108.1.1 73393 1i12A 160 2.51e-12 d.108.1.1 61515 1kuxA 207 3.05e-12 d.108.1.1 73021 2qecA 204 3.27e-12 3blnA 143 3.33e-12 2jdcA 146 3.34e-12 2ft0A 235 3.46e-12 2bswA 146 3.71e-12 d.108.1.1 129127 2q0yA 153 3.77e-12 2fiwA 172 4.07e-12 d.108.1.1 133539 1y9kA 157 4.45e-12 d.108.1.1 122779 2ganA 190 5.07e-12 d.108.1.1 134889 1y7rA 133 5.14e-12 d.108.1.1 122716 2ozgA 396 6.12e-12 1qstA 160 6.53e-12 d.108.1.1 40804 1q2yA 140 6.80e-12 d.108.1.1 95655 2ozhA 142 8.24e-12 2c27A 315 9.14e-12 d.108.1.1 129659 2atrA 138 1.01e-11 d.108.1.1 127305 1p0hA 318 1.54e-11 d.108.1.1 93866 1vkcA 158 1.91e-11 d.108.1.1 113663 1y9wA 140 2.58e-11 d.108.1.1 122783 1m4iA 181 3.46e-11 d.108.1.1 74457 1n71A 180 3.64e-11 d.108.1.1 85370 1yx0A 159 4.98e-11 d.108.1.1 124168 2g3aA 152 1.08e-10 d.108.1.1 134557 1bo4A 168 1.13e-10 d.108.1.1 40798 2g0bA 198 3.07e-08 2r98A 456 3.25e-07 1ro5A 201 1.15e-06 d.108.1.3 105023 1kzfA 230 2.78e-05 d.108.1.3 73354 2aj6A 159 5.72e-05 d.108.1.1 126841 1ne9A 335 0.000364 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.000618 1yleA 342 0.000903 d.108.1.8 123647 1iicA 422 0.006689 d.108.1.2,d.108.1.2 62422,62423 2givA 295 0.2533 d.108.1.1 135253 1xmtA 103 0.5215 d.108.1.1 115561 1bob 320 0.5521 2pq8A 278 0.8434 1fy7A 278 0.9902 d.108.1.1 40817 1lrzA 426 1.180 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1bobA 320 1.387 d.108.1.1 40816 1nuiA 255 7.565 e.13.1.2,g.41.3.2 86194,86195 1l3kA 196 10.87 d.58.7.1,d.58.7.1 73539,73540 1svjA 156 13.30 d.220.1.1 106049 1tuhA 156 15.27 d.17.4.11 107345 2r85A 334 20.17 1y791 680 24.21 1r6xA 395 24.99 b.122.1.3,c.26.1.5 97167,97168 2b8eA 273 26.70 c.108.1.7,d.220.1.1 128068,128069 1q0eA 152 27.45 b.1.8.1 95504 1e9pA 151 30.71 b.1.8.1 22215 2p0wA 324 31.15 1yloA 348 33.88 b.49.3.1,c.56.5.4 123659,123660 1bywA 110 35.51 d.110.3.6 40912 1ru8A 232 39.34 c.26.2.1 97849 1tkeA 224 40.16 d.15.10.1,d.67.1.1 112470,112471 1dd9A 338 40.42 e.13.1.1 43254 1tca 317 42.01 2hqyA 305 43.68 2yvyA 278 43.96 3c8cA 240 45.67 1zfjA 491 46.32 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1nmsA 249 46.35 c.17.1.1 85879 1nwwA 149 46.58 d.17.4.8 86306 1oalA 151 47.43 b.1.8.1 86739 1pzsA 208 47.67 b.1.8.1 104397 2bngA 149 48.04 2dnjA 260 49.26 d.151.1.1 41790 2qfjA 216 49.91 1f1gA 154 51.74 b.1.8.1 76153 1gsaA 316 51.77 c.30.1.3,d.142.1.1 31718,41477 1mfmA 153 54.65 b.1.8.1 22246 2hvwA 184 56.26 2cxaA 256 58.24 d.108.1.6 130993 2b02A 119 61.02 1vr9A 213 62.16 d.37.1.1,d.37.1.1 120446,120447 1xsoA 150 65.29 b.1.8.1 22273 1pu1A 94 65.97 d.266.1.1 104307 2k0mA 104 67.18 2b25A 336 67.86 c.66.1.13 127699 2ouxA 286 68.35 1p7gA 222 68.68 a.2.11.1,d.44.1.1 94223,94224 1esoA 154 69.00 b.1.8.1 22293 2ywkA 95 70.78 2ootA 709 71.55 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2b18A 164 71.66 2p9mA 138 71.73 1to4A 156 71.80 b.1.8.1 107162 2c2iA 151 71.86 d.38.1.4 129670 3b7cA 122 73.39 1s4iA 175 74.25 2h30A 164 74.39 1pvmA 184 75.64 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1iq6A 134 75.87 d.38.1.4 76755 2hk9A 275 76.45 2pblA 262 77.81 2nycA 144 78.18 d.37.1.1 138812 2gx5A 170 78.38 1a9xA 1058 80.48 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1o50A 157 82.95 d.37.1.1,d.37.1.1 92478,92479 2qggA 182 82.99 1zh5A 195 85.64 a.4.5.46,d.58.7.1 125073,125074 2hglA 136 85.68 1s4bP 674 86.25 d.92.1.5 105252 2gpcA 194 86.28 2g84A 197 86.68 c.97.1.2 134766 1gsa 316 87.03 2arfA 165 87.48 2citA 282 87.69 c.1.8.3 130499 1mngA 203 88.00 a.2.11.1,d.44.1.1 15776,38701 1fxlA 167 88.38 d.58.7.1,d.58.7.1 39183,39184 2awpA 198 88.68 2aqqA 164 88.74 2nybA 192 89.64 a.2.11.1,d.44.1.1 138804,138805 1q98A 165 89.94 c.47.1.10 96253 1z9pA 155 89.96