# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nslA 184 8.76e-19 d.108.1.1 86137 1yreA 197 1.18e-18 d.108.1.1 123919 2fckA 181 2.05e-18 d.108.1.1 133272 2z10A 194 3.31e-18 2oh1A 179 3.88e-18 2fsrA 195 5.92e-18 d.108.1.1 134036 1s7kA 182 1.28e-17 d.108.1.1 118878 1vhsA 175 1.47e-17 d.108.1.1 100698 2ge3A 170 1.56e-17 d.108.1.1 135044 2fe7A 166 4.23e-17 d.108.1.1 133325 2qmlA 198 4.46e-17 2j8mA 172 4.70e-17 1yk3A 210 4.92e-17 d.108.1.1 123493 1yvoA 172 5.49e-17 d.108.1.1 124106 2prbA 196 5.95e-17 2ob0A 170 6.12e-17 1yr0A 175 6.58e-17 d.108.1.1 123905 1tiqA 180 6.84e-17 d.108.1.1 107010 2b5gA 171 7.12e-17 d.108.1.1 127892 1qsmA 152 8.41e-17 d.108.1.1 40808 2cy2A 174 8.84e-17 d.108.1.1 131016 2r1iA 172 9.93e-17 2fiaA 162 1.63e-16 d.108.1.1 133514 2fl4A 149 1.71e-16 d.108.1.1 133706 2ae6A 166 1.89e-16 d.108.1.1 126600 1s3zA 165 1.89e-16 d.108.1.1 105250 2i6cA 160 1.99e-16 d.108.1.1 137095 1mk4A 157 2.08e-16 d.108.1.1 84979 1on0A 158 2.47e-16 d.108.1.1 87095 2cntA 160 3.14e-16 1u6mA 199 3.32e-16 d.108.1.1 113069 2pdoA 144 3.89e-16 1gheA 177 4.02e-16 d.108.1.1 76222 1z4eA 153 5.17e-16 d.108.1.1 124431 2q4vA 170 5.23e-16 d.108.1.1 139878 2i79A 172 5.43e-16 2dxqA 150 6.05e-16 2o28A 184 8.16e-16 2r7hA 177 9.34e-16 1sqhA 312 1.07e-15 d.108.1.5 98966 2euiA 153 1.16e-15 d.108.1.1 132387 2hv2A 400 1.31e-15 2ft0A 235 1.98e-15 1z4rA 168 2.12e-15 d.108.1.1 124444 2pc1A 201 2.38e-15 3c26A 266 2.45e-15 1cjwA 166 2.98e-15 d.108.1.1 40818 1xebA 150 3.77e-15 d.108.1.1 115219 2reeA 224 4.26e-15 2fiwA 172 5.51e-15 d.108.1.1 133539 1i1dA 161 5.95e-15 d.108.1.1 61526 2i00A 406 6.62e-15 1y9kA 157 7.27e-15 d.108.1.1 122779 1wwzA 159 7.80e-15 d.108.1.1 121380 1i12A 160 8.36e-15 d.108.1.1 61515 1yvkA 163 1.32e-14 d.108.1.1 124101 2q0yA 153 1.50e-14 2bswA 146 1.67e-14 d.108.1.1 129127 2jdcA 146 2.08e-14 1yghA 164 2.19e-14 d.108.1.1 40802 3blnA 143 2.42e-14 2c27A 315 2.50e-14 d.108.1.1 129659 2qecA 204 2.59e-14 1kuxA 207 2.81e-14 d.108.1.1 73021 1l0cA 207 2.97e-14 d.108.1.1 73393 1qstA 160 3.43e-14 d.108.1.1 40804 1q2yA 140 3.75e-14 d.108.1.1 95655 2ozgA 396 4.32e-14 1y7rA 133 5.27e-14 d.108.1.1 122716 2ozhA 142 5.85e-14 1vkcA 158 5.96e-14 d.108.1.1 113663 2ganA 190 7.24e-14 d.108.1.1 134889 1y9wA 140 1.01e-13 d.108.1.1 122783 1p0hA 318 1.14e-13 d.108.1.1 93866 2atrA 138 2.53e-13 d.108.1.1 127305 1m4iA 181 5.36e-13 d.108.1.1 74457 1n71A 180 5.39e-13 d.108.1.1 85370 1yx0A 159 5.56e-13 d.108.1.1 124168 1bo4A 168 6.20e-13 d.108.1.1 40798 2g3aA 152 9.73e-13 d.108.1.1 134557 2g0bA 198 7.57e-10 2r98A 456 9.60e-09 1ro5A 201 1.04e-07 d.108.1.3 105023 2aj6A 159 1.30e-06 d.108.1.1 126841 1kzfA 230 1.60e-06 d.108.1.3 73354 2q04A 211 8.19e-05 1ne9A 335 0.000130 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.000280 d.108.1.8 123647 1iicA 422 0.001621 d.108.1.2,d.108.1.2 62422,62423 1lrzA 426 0.1015 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1xmtA 103 0.1090 d.108.1.1 115561 1bob 320 0.3008 2givA 295 0.3340 d.108.1.1 135253 2pq8A 278 0.4873 1bobA 320 0.6231 d.108.1.1 40816 1fy7A 278 0.8478 d.108.1.1 40817 2p0wA 324 1.428 1nuiA 255 7.268 e.13.1.2,g.41.3.2 86194,86195 1pvmA 184 9.755 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1iukA 140 11.22 c.2.1.8 83712 2yvyA 278 11.27 2cxaA 256 12.82 d.108.1.6 130993 1cs0A 1073 13.50 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2epjA 434 13.77 1l3kA 196 14.61 d.58.7.1,d.58.7.1 73539,73540 2p7jA 287 16.05 2yziA 138 16.14 1a9xA 1058 16.21 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1zfjA 491 16.34 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2rc3A 135 16.81 2b8eA 273 16.87 c.108.1.7,d.220.1.1 128068,128069 2citA 282 17.74 c.1.8.3 130499 1pzsA 208 18.93 b.1.8.1 104397 2nycA 144 19.42 d.37.1.1 138812 2ouxA 286 19.51 1bywA 110 19.54 d.110.3.6 40912 1svjA 156 21.78 d.220.1.1 106049 2hqyA 305 22.78 2uubK 129 22.81 c.55.4.1 139942 2hk9A 275 25.66 1y791 680 25.70 1y5hA 133 25.77 d.37.1.1,d.37.1.1 122635,122636 1oalA 151 25.80 b.1.8.1 86739 1o50A 157 26.03 d.37.1.1,d.37.1.1 92478,92479 1tkeA 224 26.60 d.15.10.1,d.67.1.1 112470,112471 1vr9A 213 27.03 d.37.1.1,d.37.1.1 120446,120447 2vqeK 129 28.14 2ef7A 133 30.04 2qkpA 151 30.61 1vi2A 300 31.89 c.2.1.7,c.58.1.5 100726,100727 3c8cA 240 33.17 1npyA 271 33.84 c.2.1.7,c.58.1.5 85995,85996 1x0oA 119 34.51 2r85A 334 34.65 1nvtA 287 35.73 c.2.1.7,c.58.1.5 86270,86271 2uv4A 152 36.11 2hvwA 184 36.60 1f6yA 262 37.31 c.1.21.2 29673 1tuhA 156 38.50 d.17.4.11 107345 1xtmA 175 39.13 1nmsA 249 39.36 c.17.1.1 85879 1pu1A 94 42.16 d.266.1.1 104307 2p9mA 138 42.35 2bphA 140 42.67 2b02A 119 43.54 2bpdA 142 44.28 2dnjA 260 45.24 d.151.1.1 41790 1lehA 364 45.42 c.2.1.7,c.58.1.1 30268,33916 1dd9A 338 45.64 e.13.1.1 43254 1r6xA 395 45.93 b.122.1.3,c.26.1.5 97167,97168 1eysH 259 46.24 b.41.1.1,f.23.10.1 25484,43517 2pfiA 164 48.53 2b18A 164 49.64 1yavA 159 50.47 d.37.1.1,d.37.1.1 116595,116596 2e7uA 424 51.14 2ywkA 95 51.27 2z1aA 552 52.81 2bngA 149 53.32 1div 149 54.00 1gsaA 316 54.71 c.30.1.3,d.142.1.1 31718,41477 2qfjA 216 54.96 1s4iA 175 55.44 1xtoA 311 57.82 d.157.1.6 116030 2qcvA 332 59.06 1wkqA 164 60.58 c.97.1.2 109393 1q0eA 152 61.03 b.1.8.1 95504 1n9lA 109 63.69 d.110.3.6 85468 2c2iA 151 65.06 d.38.1.4 129670 1f1gA 154 67.31 b.1.8.1 76153 2k0mA 104 69.44 2hp1A 432 71.31 2gj3A 120 74.46 1vliA 385 75.50 b.85.1.1,c.1.10.6 108830,108831 2gx5A 170 75.68 1gsa 316 76.28 2ob3A 330 77.86 1zzmA 259 77.97 c.1.9.12 125911 1v4pA 157 77.99 d.67.1.2 113533 2awpA 198 78.41 2i8aA 252 79.38 1vjfA 180 81.66 d.116.1.1 100809 1s4bP 674 82.59 d.92.1.5 105252 1ru8A 232 82.82 c.26.2.1 97849 2dkoA 146 83.14 1nwwA 149 83.53 d.17.4.8 86306 1iscA 192 85.16 a.2.11.1,d.44.1.1 15733,38726 1gsoA 431 85.61 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2h30A 164 87.64 2pd8A 149 87.87 2hrdA 253 88.62 2qggA 182 89.11 2arfA 165 89.33