# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 2.95e-18 d.108.1.1 123919 1nslA 184 7.38e-18 d.108.1.1 86137 2fckA 181 8.73e-18 d.108.1.1 133272 2fsrA 195 1.22e-17 d.108.1.1 134036 2z10A 194 2.22e-17 1s7kA 182 3.52e-17 d.108.1.1 118878 2oh1A 179 4.58e-17 2ge3A 170 5.14e-17 d.108.1.1 135044 1vhsA 175 8.14e-17 d.108.1.1 100698 2qmlA 198 9.68e-17 2prbA 196 1.73e-16 1yk3A 210 1.99e-16 d.108.1.1 123493 2j8mA 172 2.10e-16 1yvoA 172 2.25e-16 d.108.1.1 124106 2r1iA 172 2.39e-16 2b5gA 171 2.95e-16 d.108.1.1 127892 1yr0A 175 3.19e-16 d.108.1.1 123905 2cy2A 174 3.35e-16 d.108.1.1 131016 1qsmA 152 3.36e-16 d.108.1.1 40808 2fl4A 149 4.08e-16 d.108.1.1 133706 2ae6A 166 4.39e-16 d.108.1.1 126600 2fe7A 166 4.69e-16 d.108.1.1 133325 1tiqA 180 4.79e-16 d.108.1.1 107010 2ob0A 170 4.80e-16 1s3zA 165 5.72e-16 d.108.1.1 105250 2fiaA 162 6.85e-16 d.108.1.1 133514 1mk4A 157 1.17e-15 d.108.1.1 84979 2i6cA 160 1.26e-15 d.108.1.1 137095 2cntA 160 1.32e-15 2pdoA 144 1.47e-15 2dxqA 150 1.70e-15 1on0A 158 1.70e-15 d.108.1.1 87095 2i79A 172 2.27e-15 1sqhA 312 2.41e-15 d.108.1.5 98966 1z4eA 153 2.52e-15 d.108.1.1 124431 1u6mA 199 2.84e-15 d.108.1.1 113069 2r7hA 177 3.13e-15 1gheA 177 3.43e-15 d.108.1.1 76222 2euiA 153 4.88e-15 d.108.1.1 132387 2q4vA 170 4.97e-15 d.108.1.1 139878 1xebA 150 5.88e-15 d.108.1.1 115219 2o28A 184 6.34e-15 2pc1A 201 6.84e-15 3c26A 266 7.73e-15 2ft0A 235 9.02e-15 2hv2A 400 9.16e-15 1cjwA 166 1.01e-14 d.108.1.1 40818 2reeA 224 1.97e-14 1wwzA 159 2.01e-14 d.108.1.1 121380 1z4rA 168 2.18e-14 d.108.1.1 124444 1i1dA 161 2.62e-14 d.108.1.1 61526 1yghA 164 2.84e-14 d.108.1.1 40802 1l0cA 207 2.86e-14 d.108.1.1 73393 2i00A 406 3.06e-14 1yvkA 163 3.55e-14 d.108.1.1 124101 2jdcA 146 4.15e-14 1kuxA 207 4.68e-14 d.108.1.1 73021 1y9kA 157 5.40e-14 d.108.1.1 122779 1q2yA 140 5.58e-14 d.108.1.1 95655 1y7rA 133 5.86e-14 d.108.1.1 122716 2fiwA 172 6.37e-14 d.108.1.1 133539 2bswA 146 6.79e-14 d.108.1.1 129127 1i12A 160 6.98e-14 d.108.1.1 61515 2ozhA 142 8.29e-14 2ganA 190 8.47e-14 d.108.1.1 134889 2q0yA 153 8.53e-14 1qstA 160 9.72e-14 d.108.1.1 40804 3blnA 143 1.02e-13 1vkcA 158 1.41e-13 d.108.1.1 113663 2ozgA 396 1.43e-13 2c27A 315 1.63e-13 d.108.1.1 129659 1p0hA 318 2.04e-13 d.108.1.1 93866 2qecA 204 2.13e-13 2atrA 138 3.99e-13 d.108.1.1 127305 1n71A 180 5.09e-13 d.108.1.1 85370 1y9wA 140 6.85e-13 d.108.1.1 122783 1m4iA 181 1.09e-12 d.108.1.1 74457 1yx0A 159 1.30e-12 d.108.1.1 124168 2g3aA 152 3.94e-12 d.108.1.1 134557 1bo4A 168 4.15e-12 d.108.1.1 40798 2g0bA 198 8.42e-09 2r98A 456 9.21e-08 1ro5A 201 2.53e-07 d.108.1.3 105023 1kzfA 230 2.63e-05 d.108.1.3 73354 2aj6A 159 3.85e-05 d.108.1.1 126841 1ne9A 335 0.000163 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.000956 1yleA 342 0.001623 d.108.1.8 123647 1iicA 422 0.005022 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.1783 d.108.1.1 115561 1fy7A 278 0.2611 d.108.1.1 40817 2givA 295 0.2645 d.108.1.1 135253 2pq8A 278 0.3168 1lrzA 426 1.348 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1bob 320 1.442 1bobA 320 4.702 d.108.1.1 40816 2cxaA 256 11.89 d.108.1.6 130993 2p0wA 324 12.39 1svjA 156 12.39 d.220.1.1 106049 1nuiA 255 12.48 e.13.1.2,g.41.3.2 86194,86195 1tuhA 156 15.13 d.17.4.11 107345 2epjA 434 18.93 1lzlA 323 19.02 c.69.1.2 78306 2b25A 336 19.27 c.66.1.13 127699 1bx4A 345 22.44 c.72.1.1 34935 2citA 282 22.96 c.1.8.3 130499 2b8eA 273 23.01 c.108.1.7,d.220.1.1 128068,128069 1dd9A 338 23.66 e.13.1.1 43254 1cs0A 1073 24.89 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1gsoA 431 25.27 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2r85A 334 25.33 1nmsA 249 25.87 c.17.1.1 85879 2pblA 262 26.02 2bngA 149 26.37 1l3kA 196 29.49 d.58.7.1,d.58.7.1 73539,73540 1u4nA 310 30.27 c.69.1.2 113021 2c42A 1231 30.55 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1y791 680 31.82 1bywA 110 32.66 d.110.3.6 40912 1a9xA 1058 33.91 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1zfjA 491 35.69 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2ob3A 330 36.56 1pvmA 184 36.62 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1tkeA 224 37.23 d.15.10.1,d.67.1.1 112470,112471 2yvyA 278 38.33 1r6xA 395 38.97 b.122.1.3,c.26.1.5 97167,97168 1hp1A 516 39.14 d.114.1.1,d.159.1.2 70976,70977 1yloA 348 39.75 b.49.3.1,c.56.5.4 123659,123660 2rc3A 135 43.09 2hfkA 319 44.21 2ouxA 286 46.99 2qkpA 151 47.31 1eu8A 409 50.75 c.94.1.1 59502 1nwwA 149 50.92 d.17.4.8 86306 2hk9A 275 50.93 1o54A 277 51.49 c.66.1.13 92482 2dnjA 260 51.53 d.151.1.1 41790 1ru8A 232 57.69 c.26.2.1 97849 2yziA 138 59.74 2b02A 119 59.97 2p9mA 138 60.36 2dkoA 146 62.77 1o50A 157 67.35 d.37.1.1,d.37.1.1 92478,92479 1vkhA 273 69.52 c.69.1.32 108662 2z1aA 552 71.46 2qfjA 216 71.72 2ywkA 95 71.99 2cl5A 221 72.41 c.66.1.1 130570 2hvwA 184 77.09 2h30A 164 79.19 2ef7A 133 79.75 1tca 317 81.33 2qcvA 332 81.64 1iscA 192 83.00 a.2.11.1,d.44.1.1 15733,38726 2nybA 192 85.67 a.2.11.1,d.44.1.1 138804,138805 2nycA 144 86.34 d.37.1.1 138812 1q0eA 152 88.91 b.1.8.1 95504