# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 1.72e-18 d.108.1.1 123919 2fckA 181 4.37e-18 d.108.1.1 133272 1nslA 184 5.04e-18 d.108.1.1 86137 2fsrA 195 8.18e-18 d.108.1.1 134036 2z10A 194 1.02e-17 1s7kA 182 2.43e-17 d.108.1.1 118878 2oh1A 179 2.60e-17 2ge3A 170 3.06e-17 d.108.1.1 135044 2qmlA 198 7.71e-17 1vhsA 175 7.76e-17 d.108.1.1 100698 2r1iA 172 1.16e-16 2prbA 196 1.22e-16 1yk3A 210 1.25e-16 d.108.1.1 123493 2b5gA 171 1.50e-16 d.108.1.1 127892 1qsmA 152 1.59e-16 d.108.1.1 40808 2j8mA 172 1.70e-16 2fl4A 149 2.29e-16 d.108.1.1 133706 1yvoA 172 2.30e-16 d.108.1.1 124106 2cy2A 174 2.53e-16 d.108.1.1 131016 1yr0A 175 2.87e-16 d.108.1.1 123905 2fe7A 166 3.04e-16 d.108.1.1 133325 2ob0A 170 3.05e-16 2ae6A 166 3.50e-16 d.108.1.1 126600 1tiqA 180 3.79e-16 d.108.1.1 107010 1s3zA 165 3.82e-16 d.108.1.1 105250 2fiaA 162 4.26e-16 d.108.1.1 133514 1mk4A 157 6.68e-16 d.108.1.1 84979 2i6cA 160 7.57e-16 d.108.1.1 137095 2pdoA 144 7.76e-16 2dxqA 150 1.05e-15 1sqhA 312 1.18e-15 d.108.1.5 98966 1on0A 158 1.33e-15 d.108.1.1 87095 2cntA 160 1.37e-15 1z4eA 153 1.68e-15 d.108.1.1 124431 2i79A 172 1.82e-15 1gheA 177 2.07e-15 d.108.1.1 76222 1u6mA 199 2.27e-15 d.108.1.1 113069 2euiA 153 2.60e-15 d.108.1.1 132387 2q4vA 170 2.73e-15 d.108.1.1 139878 2r7hA 177 2.95e-15 2o28A 184 3.44e-15 2pc1A 201 4.09e-15 1xebA 150 5.30e-15 d.108.1.1 115219 2hv2A 400 6.45e-15 3c26A 266 7.08e-15 1cjwA 166 8.29e-15 d.108.1.1 40818 2reeA 224 1.20e-14 2ft0A 235 1.35e-14 1i1dA 161 1.52e-14 d.108.1.1 61526 1wwzA 159 1.65e-14 d.108.1.1 121380 1z4rA 168 1.69e-14 d.108.1.1 124444 1l0cA 207 2.16e-14 d.108.1.1 73393 1yghA 164 2.41e-14 d.108.1.1 40802 2i00A 406 2.66e-14 2jdcA 146 2.82e-14 1kuxA 207 3.97e-14 d.108.1.1 73021 1yvkA 163 4.26e-14 d.108.1.1 124101 2q0yA 153 4.41e-14 1y7rA 133 4.59e-14 d.108.1.1 122716 1i12A 160 4.68e-14 d.108.1.1 61515 1y9kA 157 4.77e-14 d.108.1.1 122779 2bswA 146 5.01e-14 d.108.1.1 129127 2ganA 190 5.54e-14 d.108.1.1 134889 1q2yA 140 5.55e-14 d.108.1.1 95655 2ozhA 142 6.06e-14 2fiwA 172 6.52e-14 d.108.1.1 133539 1qstA 160 6.58e-14 d.108.1.1 40804 3blnA 143 8.78e-14 2ozgA 396 1.04e-13 1p0hA 318 1.42e-13 d.108.1.1 93866 2c27A 315 1.64e-13 d.108.1.1 129659 1vkcA 158 1.78e-13 d.108.1.1 113663 2qecA 204 2.24e-13 2atrA 138 3.34e-13 d.108.1.1 127305 1n71A 180 3.85e-13 d.108.1.1 85370 1yx0A 159 8.63e-13 d.108.1.1 124168 1m4iA 181 8.82e-13 d.108.1.1 74457 1y9wA 140 9.04e-13 d.108.1.1 122783 2g3aA 152 3.13e-12 d.108.1.1 134557 1bo4A 168 4.10e-12 d.108.1.1 40798 2g0bA 198 9.60e-09 2r98A 456 9.79e-08 1ro5A 201 2.52e-07 d.108.1.3 105023 1kzfA 230 2.56e-05 d.108.1.3 73354 2aj6A 159 4.04e-05 d.108.1.1 126841 1ne9A 335 0.000252 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.001216 1yleA 342 0.001298 d.108.1.8 123647 1iicA 422 0.005399 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.2691 d.108.1.1 115561 2givA 295 0.4231 d.108.1.1 135253 1fy7A 278 0.4869 d.108.1.1 40817 2pq8A 278 0.7553 1lrzA 426 1.745 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1bob 320 1.777 1bobA 320 8.441 d.108.1.1 40816 1svjA 156 13.21 d.220.1.1 106049 1tuhA 156 14.01 d.17.4.11 107345 1nuiA 255 15.28 e.13.1.2,g.41.3.2 86194,86195 1lzlA 323 16.65 c.69.1.2 78306 2citA 282 17.01 c.1.8.3 130499 2pblA 262 19.03 2epjA 434 19.66 1nmsA 249 23.11 c.17.1.1 85879 2c42A 1231 23.94 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2b8eA 273 24.38 c.108.1.7,d.220.1.1 128068,128069 2cxaA 256 24.59 d.108.1.6 130993 2b25A 336 24.82 c.66.1.13 127699 2p0wA 324 26.79 1u4nA 310 27.76 c.69.1.2 113021 2hfkA 319 29.52 1bx4A 345 34.61 c.72.1.1 34935 2ob3A 330 34.62 1dd9A 338 34.79 e.13.1.1 43254 1l3kA 196 35.86 d.58.7.1,d.58.7.1 73539,73540 1vkhA 273 36.43 c.69.1.32 108662 2bngA 149 37.43 1ru8A 232 37.49 c.26.2.1 97849 1zfjA 491 37.63 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1yloA 348 39.14 b.49.3.1,c.56.5.4 123659,123660 1r6xA 395 40.69 b.122.1.3,c.26.1.5 97167,97168 2r85A 334 40.98 1eu8A 409 40.99 c.94.1.1 59502 1o54A 277 42.32 c.66.1.13 92482 1pvmA 184 43.45 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1tkeA 224 44.18 d.15.10.1,d.67.1.1 112470,112471 1y791 680 45.82 1gsoA 431 47.46 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2dnjA 260 51.41 d.151.1.1 41790 1cs0A 1073 51.76 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2rc3A 135 52.15 2dkoA 146 52.77 2ouxA 286 53.52 2qkpA 151 61.17 2hk9A 275 62.16 2yvyA 278 63.12 2cl5A 221 65.73 c.66.1.1 130570 1nwwA 149 69.93 d.17.4.8 86306 1o50A 157 70.85 d.37.1.1,d.37.1.1 92478,92479 2qfjA 216 70.94 1a9xA 1058 74.70 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1hp1A 516 77.05 d.114.1.1,d.159.1.2 70976,70977 1bywA 110 77.43 d.110.3.6 40912 2b02A 119 78.02 2p9mA 138 78.22 1tca 317 78.39 2ywkA 95 79.34 2hvwA 184 80.80 1fxlA 167 84.97 d.58.7.1,d.58.7.1 39183,39184 2yziA 138 87.87