# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 2.64e-18 d.108.1.1 123919 1nslA 184 6.37e-18 d.108.1.1 86137 2fckA 181 7.11e-18 d.108.1.1 133272 2fsrA 195 1.11e-17 d.108.1.1 134036 2z10A 194 1.53e-17 1s7kA 182 3.21e-17 d.108.1.1 118878 2ge3A 170 4.01e-17 d.108.1.1 135044 2oh1A 179 4.27e-17 1vhsA 175 6.54e-17 d.108.1.1 100698 2qmlA 198 1.07e-16 1yk3A 210 1.67e-16 d.108.1.1 123493 2prbA 196 1.71e-16 2j8mA 172 1.77e-16 2r1iA 172 1.91e-16 2b5gA 171 1.94e-16 d.108.1.1 127892 1qsmA 152 1.97e-16 d.108.1.1 40808 1yvoA 172 2.58e-16 d.108.1.1 124106 1yr0A 175 2.62e-16 d.108.1.1 123905 2cy2A 174 3.66e-16 d.108.1.1 131016 2fl4A 149 3.90e-16 d.108.1.1 133706 2fe7A 166 3.92e-16 d.108.1.1 133325 2ob0A 170 4.40e-16 1tiqA 180 4.72e-16 d.108.1.1 107010 2ae6A 166 5.10e-16 d.108.1.1 126600 1s3zA 165 5.15e-16 d.108.1.1 105250 2fiaA 162 6.59e-16 d.108.1.1 133514 2i6cA 160 8.41e-16 d.108.1.1 137095 2pdoA 144 1.09e-15 2dxqA 150 1.18e-15 1mk4A 157 1.40e-15 d.108.1.1 84979 1sqhA 312 1.46e-15 d.108.1.5 98966 1on0A 158 1.47e-15 d.108.1.1 87095 1z4eA 153 1.84e-15 d.108.1.1 124431 2cntA 160 1.88e-15 2i79A 172 2.27e-15 1u6mA 199 2.36e-15 d.108.1.1 113069 1gheA 177 3.34e-15 d.108.1.1 76222 2euiA 153 3.40e-15 d.108.1.1 132387 2r7hA 177 3.54e-15 2q4vA 170 4.38e-15 d.108.1.1 139878 2pc1A 201 4.54e-15 2o28A 184 4.70e-15 1xebA 150 6.30e-15 d.108.1.1 115219 2hv2A 400 9.45e-15 1cjwA 166 9.65e-15 d.108.1.1 40818 3c26A 266 1.04e-14 2ft0A 235 1.36e-14 2reeA 224 1.72e-14 1wwzA 159 1.84e-14 d.108.1.1 121380 1i1dA 161 2.26e-14 d.108.1.1 61526 1l0cA 207 2.29e-14 d.108.1.1 73393 1z4rA 168 2.29e-14 d.108.1.1 124444 1yghA 164 2.89e-14 d.108.1.1 40802 2i00A 406 3.86e-14 1kuxA 207 4.43e-14 d.108.1.1 73021 2fiwA 172 5.03e-14 d.108.1.1 133539 2q0yA 153 5.19e-14 1yvkA 163 5.20e-14 d.108.1.1 124101 2jdcA 146 5.55e-14 1i12A 160 6.54e-14 d.108.1.1 61515 2ozhA 142 6.79e-14 1q2yA 140 6.83e-14 d.108.1.1 95655 2ganA 190 6.91e-14 d.108.1.1 134889 1y7rA 133 7.71e-14 d.108.1.1 122716 3blnA 143 7.89e-14 1qstA 160 8.75e-14 d.108.1.1 40804 1y9kA 157 8.78e-14 d.108.1.1 122779 2bswA 146 8.91e-14 d.108.1.1 129127 1p0hA 318 1.18e-13 d.108.1.1 93866 2ozgA 396 1.43e-13 2c27A 315 1.87e-13 d.108.1.1 129659 2qecA 204 1.94e-13 1vkcA 158 2.01e-13 d.108.1.1 113663 2atrA 138 3.37e-13 d.108.1.1 127305 1n71A 180 3.49e-13 d.108.1.1 85370 1m4iA 181 7.69e-13 d.108.1.1 74457 1y9wA 140 1.10e-12 d.108.1.1 122783 1yx0A 159 1.16e-12 d.108.1.1 124168 1bo4A 168 3.86e-12 d.108.1.1 40798 2g3aA 152 5.12e-12 d.108.1.1 134557 2g0bA 198 1.02e-08 2r98A 456 8.90e-08 1ro5A 201 2.31e-07 d.108.1.3 105023 1kzfA 230 2.80e-05 d.108.1.3 73354 2aj6A 159 3.35e-05 d.108.1.1 126841 1ne9A 335 0.000147 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.001442 1yleA 342 0.001511 d.108.1.8 123647 1iicA 422 0.004735 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.2290 d.108.1.1 115561 2givA 295 0.4017 d.108.1.1 135253 1fy7A 278 0.4306 d.108.1.1 40817 2pq8A 278 1.114 1bob 320 2.494 1lrzA 426 3.047 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1tuhA 156 13.74 d.17.4.11 107345 1nmsA 249 13.95 c.17.1.1 85879 1bobA 320 13.97 d.108.1.1 40816 1svjA 156 14.42 d.220.1.1 106049 1nuiA 255 15.02 e.13.1.2,g.41.3.2 86194,86195 1lzlA 323 16.18 c.69.1.2 78306 2citA 282 16.91 c.1.8.3 130499 2epjA 434 20.37 2b25A 336 20.68 c.66.1.13 127699 2pblA 262 22.21 2b8eA 273 24.06 c.108.1.7,d.220.1.1 128068,128069 2c42A 1231 24.41 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2cxaA 256 26.22 d.108.1.6 130993 1u4nA 310 29.79 c.69.1.2 113021 1bx4A 345 30.56 c.72.1.1 34935 1yloA 348 32.83 b.49.3.1,c.56.5.4 123659,123660 2ob3A 330 34.50 2hfkA 319 35.84 1tkeA 224 36.24 d.15.10.1,d.67.1.1 112470,112471 1dd9A 338 36.54 e.13.1.1 43254 1zfjA 491 37.26 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2dkoA 146 40.74 1pvmA 184 41.88 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2bngA 149 42.58 1y791 680 46.06 2p0wA 324 47.46 2r85A 334 48.52 1ru8A 232 49.35 c.26.2.1 97849 1l3kA 196 51.40 d.58.7.1,d.58.7.1 73539,73540 1r6xA 395 52.29 b.122.1.3,c.26.1.5 97167,97168 2dnjA 260 54.71 d.151.1.1 41790 1o54A 277 56.10 c.66.1.13 92482 2yvyA 278 57.83 1vkhA 273 58.08 c.69.1.32 108662 1eu8A 409 58.28 c.94.1.1 59502 2ouxA 286 58.50 1cs0A 1073 58.69 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1gsoA 431 59.44 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2b02A 119 60.35 2rc3A 135 63.53 1bywA 110 65.81 d.110.3.6 40912 2hk9A 275 66.41 2h30A 164 68.21 2cl5A 221 69.05 c.66.1.1 130570 2qkpA 151 70.63 1hp1A 516 73.67 d.114.1.1,d.159.1.2 70976,70977 1tca 317 74.50 1nwwA 149 74.63 d.17.4.8 86306 2fp3A 316 77.09 2p9mA 138 78.93 2hyxA 352 81.32 2hvwA 184 81.93 1a9xA 1058 82.30 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1o50A 157 83.59 d.37.1.1,d.37.1.1 92478,92479