# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 4.24e-16 d.108.1.1 123919 2fckA 181 4.76e-16 d.108.1.1 133272 2fsrA 195 5.26e-16 d.108.1.1 134036 2z10A 194 6.36e-16 1nslA 184 1.16e-15 d.108.1.1 86137 1s7kA 182 3.72e-15 d.108.1.1 118878 2oh1A 179 5.47e-15 2ge3A 170 5.98e-15 d.108.1.1 135044 1yk3A 210 1.22e-14 d.108.1.1 123493 1vhsA 175 1.38e-14 d.108.1.1 100698 2prbA 196 1.66e-14 2j8mA 172 1.67e-14 2ob0A 170 1.79e-14 1qsmA 152 1.96e-14 d.108.1.1 40808 1yr0A 175 1.99e-14 d.108.1.1 123905 2qmlA 198 2.00e-14 1yvoA 172 2.27e-14 d.108.1.1 124106 2r1iA 172 2.95e-14 2fe7A 166 3.86e-14 d.108.1.1 133325 2i6cA 160 4.78e-14 d.108.1.1 137095 1s3zA 165 4.83e-14 d.108.1.1 105250 2cy2A 174 5.29e-14 d.108.1.1 131016 2b5gA 171 6.31e-14 d.108.1.1 127892 1sqhA 312 7.22e-14 d.108.1.5 98966 2pc1A 201 8.21e-14 1tiqA 180 9.79e-14 d.108.1.1 107010 2ae6A 166 1.06e-13 d.108.1.1 126600 1on0A 158 1.27e-13 d.108.1.1 87095 2cntA 160 1.52e-13 1mk4A 157 1.61e-13 d.108.1.1 84979 1z4eA 153 1.77e-13 d.108.1.1 124431 2pdoA 144 1.88e-13 2fiaA 162 2.00e-13 d.108.1.1 133514 2dxqA 150 2.34e-13 1u6mA 199 2.44e-13 d.108.1.1 113069 2euiA 153 2.56e-13 d.108.1.1 132387 2q4vA 170 3.19e-13 d.108.1.1 139878 2r7hA 177 3.45e-13 2o28A 184 3.82e-13 2ft0A 235 4.06e-13 1gheA 177 4.35e-13 d.108.1.1 76222 2i79A 172 4.36e-13 2hv2A 400 7.02e-13 2i00A 406 7.02e-13 3blnA 143 7.98e-13 1cjwA 166 8.07e-13 d.108.1.1 40818 2fl4A 149 8.81e-13 d.108.1.1 133706 2qecA 204 1.06e-12 1l0cA 207 1.27e-12 d.108.1.1 73393 2reeA 224 1.36e-12 1xebA 150 1.39e-12 d.108.1.1 115219 1i1dA 161 1.54e-12 d.108.1.1 61526 3c26A 266 1.62e-12 2ozgA 396 2.28e-12 1wwzA 159 2.59e-12 d.108.1.1 121380 1p0hA 318 2.84e-12 d.108.1.1 93866 1kuxA 207 3.00e-12 d.108.1.1 73021 1yghA 164 3.07e-12 d.108.1.1 40802 2jdcA 146 4.32e-12 1z4rA 168 4.35e-12 d.108.1.1 124444 1i12A 160 4.75e-12 d.108.1.1 61515 2fiwA 172 4.91e-12 d.108.1.1 133539 2q0yA 153 5.22e-12 2ganA 190 6.30e-12 d.108.1.1 134889 1qstA 160 9.04e-12 d.108.1.1 40804 2c27A 315 1.03e-11 d.108.1.1 129659 1yvkA 163 1.21e-11 d.108.1.1 124101 2bswA 146 2.07e-11 d.108.1.1 129127 1vkcA 158 2.11e-11 d.108.1.1 113663 1y9kA 157 2.48e-11 d.108.1.1 122779 1y7rA 133 2.55e-11 d.108.1.1 122716 1n71A 180 2.88e-11 d.108.1.1 85370 1m4iA 181 3.05e-11 d.108.1.1 74457 1q2yA 140 3.38e-11 d.108.1.1 95655 1yx0A 159 4.45e-11 d.108.1.1 124168 2ozhA 142 6.06e-11 2atrA 138 7.15e-11 d.108.1.1 127305 1bo4A 168 5.19e-10 d.108.1.1 40798 1y9wA 140 1.42e-09 d.108.1.1 122783 2g3aA 152 3.75e-09 d.108.1.1 134557 2g0bA 198 2.68e-08 2r98A 456 4.30e-07 1ro5A 201 1.47e-06 d.108.1.3 105023 2aj6A 159 5.64e-05 d.108.1.1 126841 1kzfA 230 0.000113 d.108.1.3 73354 1ne9A 335 0.000500 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.000536 1yleA 342 0.000889 d.108.1.8 123647 1iicA 422 0.01076 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.5440 1xmtA 103 0.7803 d.108.1.1 115561 2givA 295 1.024 d.108.1.1 135253 1lrzA 426 1.539 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1bobA 320 1.660 d.108.1.1 40816 1fy7A 278 2.008 d.108.1.1 40817 2pq8A 278 2.051 1gsoA 431 3.661 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2p0wA 324 5.456 2r85A 334 6.119 1lzlA 323 8.873 c.69.1.2 78306 1nmsA 249 12.38 c.17.1.1 85879 1cs0A 1073 15.53 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1nuiA 255 18.53 e.13.1.2,g.41.3.2 86194,86195 2pblA 262 22.31 2yvyA 278 23.87 1a9xA 1058 24.60 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1svjA 156 26.36 d.220.1.1 106049 1q0eA 152 29.13 b.1.8.1 95504 2ouxA 286 32.29 1f1gA 154 32.38 b.1.8.1 76153 2uubK 129 33.59 c.55.4.1 139942 2citA 282 33.61 c.1.8.3 130499 1u4nA 310 34.73 c.69.1.2 113021 1tkeA 224 36.12 d.15.10.1,d.67.1.1 112470,112471 2eb4A 267 37.83 1e9pA 151 38.74 b.1.8.1 22215 1sv6A 269 39.47 d.177.1.1 106043 2vqeK 129 42.92 1pvmA 184 43.93 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1xtmA 175 44.38 2b02A 119 45.47 1o50A 157 45.71 d.37.1.1,d.37.1.1 92478,92479 1v4pA 157 46.91 d.67.1.2 113533 1vr9A 213 51.69 d.37.1.1,d.37.1.1 120446,120447 1oalA 151 51.69 b.1.8.1 86739 2q5wE 149 53.23 1z9pA 155 53.55 3c8cA 240 54.82 1dl5A 317 55.49 c.66.1.7,d.197.1.1 64720,64721 1y5hA 133 55.84 d.37.1.1,d.37.1.1 122635,122636 2aqqA 164 57.06 1to4A 156 60.42 b.1.8.1 107162 1x0oA 119 60.46 1pzsA 208 60.57 b.1.8.1 104397 1zfjA 491 61.85 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1gsaA 316 63.07 c.30.1.3,d.142.1.1 31718,41477 1qipA 183 64.05 d.32.1.1 38470 2k0mA 104 64.12 1gsa 316 64.78 2bphA 140 64.86 1mfmA 153 65.23 b.1.8.1 22246 2b18A 164 66.31 2rc3A 135 67.89 2bpdA 142 68.32 2c42A 1231 69.07 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2hqyA 305 72.26 1jkmA 358 73.37 c.69.1.2 34633 1eayC 74 73.89 d.58.24.1 39386 1sz2A 332 74.62 c.55.1.7 112169 2a6sA 84 76.24 d.298.1.1 126305 1s4iA 175 76.31 1yloA 348 76.92 b.49.3.1,c.56.5.4 123659,123660 1lehA 364 77.25 c.2.1.7,c.58.1.1 30268,33916 1yavA 159 79.89 d.37.1.1,d.37.1.1 116595,116596 2q4hA 351 80.81 d.13.1.2,d.13.1.2 139853,139854 2nvgA 141 83.31 2ef7A 133 86.85 2aqpA 164 88.23 2oqbA 117 88.55 1fjgK 129 88.69 c.55.4.1 33733 1pu1A 94 89.83 d.266.1.1 104307