# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 2.22e-18 d.108.1.1 123919 1nslA 184 4.75e-18 d.108.1.1 86137 2fckA 181 7.70e-18 d.108.1.1 133272 2z10A 194 8.59e-18 2oh1A 179 1.10e-17 2fsrA 195 1.18e-17 d.108.1.1 134036 2ge3A 170 3.15e-17 d.108.1.1 135044 1s7kA 182 3.96e-17 d.108.1.1 118878 1vhsA 175 4.64e-17 d.108.1.1 100698 2prbA 196 8.40e-17 1yk3A 210 9.10e-17 d.108.1.1 123493 2j8mA 172 9.41e-17 2qmlA 198 9.74e-17 2r1iA 172 9.89e-17 2fe7A 166 1.15e-16 d.108.1.1 133325 2cy2A 174 1.21e-16 d.108.1.1 131016 1qsmA 152 1.26e-16 d.108.1.1 40808 2fiaA 162 1.50e-16 d.108.1.1 133514 2b5gA 171 1.59e-16 d.108.1.1 127892 1yr0A 175 1.89e-16 d.108.1.1 123905 1yvoA 172 1.99e-16 d.108.1.1 124106 2ob0A 170 2.25e-16 1mk4A 157 2.33e-16 d.108.1.1 84979 1tiqA 180 2.87e-16 d.108.1.1 107010 2fl4A 149 3.31e-16 d.108.1.1 133706 2cntA 160 3.72e-16 1s3zA 165 5.25e-16 d.108.1.1 105250 1on0A 158 5.46e-16 d.108.1.1 87095 2ae6A 166 5.51e-16 d.108.1.1 126600 1gheA 177 5.57e-16 d.108.1.1 76222 2i6cA 160 6.32e-16 d.108.1.1 137095 2dxqA 150 6.56e-16 1z4eA 153 8.16e-16 d.108.1.1 124431 2pdoA 144 9.14e-16 2euiA 153 1.27e-15 d.108.1.1 132387 1u6mA 199 1.39e-15 d.108.1.1 113069 2r7hA 177 2.00e-15 2i79A 172 2.07e-15 2pc1A 201 2.11e-15 2q4vA 170 2.25e-15 d.108.1.1 139878 1sqhA 312 2.66e-15 d.108.1.5 98966 2o28A 184 3.27e-15 2hv2A 400 3.61e-15 3c26A 266 4.22e-15 2ft0A 235 5.17e-15 1z4rA 168 5.74e-15 d.108.1.1 124444 1xebA 150 6.69e-15 d.108.1.1 115219 1wwzA 159 7.10e-15 d.108.1.1 121380 1cjwA 166 9.67e-15 d.108.1.1 40818 2i00A 406 1.26e-14 1yvkA 163 1.38e-14 d.108.1.1 124101 1yghA 164 1.77e-14 d.108.1.1 40802 2reeA 224 1.86e-14 3blnA 143 2.06e-14 1qstA 160 2.41e-14 d.108.1.1 40804 1y7rA 133 2.53e-14 d.108.1.1 122716 1y9kA 157 2.86e-14 d.108.1.1 122779 2jdcA 146 2.95e-14 2bswA 146 3.04e-14 d.108.1.1 129127 1i12A 160 3.07e-14 d.108.1.1 61515 2fiwA 172 3.16e-14 d.108.1.1 133539 1i1dA 161 3.54e-14 d.108.1.1 61526 2qecA 204 4.29e-14 1q2yA 140 4.90e-14 d.108.1.1 95655 2q0yA 153 5.14e-14 1l0cA 207 5.72e-14 d.108.1.1 73393 1kuxA 207 5.89e-14 d.108.1.1 73021 2ozgA 396 6.43e-14 2ganA 190 6.45e-14 d.108.1.1 134889 2c27A 315 7.73e-14 d.108.1.1 129659 2ozhA 142 1.35e-13 1p0hA 318 1.36e-13 d.108.1.1 93866 1vkcA 158 1.85e-13 d.108.1.1 113663 1y9wA 140 2.34e-13 d.108.1.1 122783 2atrA 138 2.56e-13 d.108.1.1 127305 1n71A 180 3.33e-13 d.108.1.1 85370 1m4iA 181 4.67e-13 d.108.1.1 74457 1bo4A 168 6.20e-13 d.108.1.1 40798 1yx0A 159 7.97e-13 d.108.1.1 124168 2g3aA 152 1.54e-12 d.108.1.1 134557 2g0bA 198 5.33e-09 2r98A 456 1.19e-07 1ro5A 201 3.06e-07 d.108.1.3 105023 1kzfA 230 9.02e-06 d.108.1.3 73354 2aj6A 159 1.56e-05 d.108.1.1 126841 1ne9A 335 8.01e-05 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 9.68e-05 1yleA 342 0.001156 d.108.1.8 123647 1iicA 422 0.008034 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.1274 d.108.1.1 115561 2givA 295 0.2080 d.108.1.1 135253 2pq8A 278 0.3007 1bob 320 0.3407 1bobA 320 0.3751 d.108.1.1 40816 1lrzA 426 0.5238 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1fy7A 278 0.5972 d.108.1.1 40817 2cxaA 256 2.730 d.108.1.6 130993 2p0wA 324 3.587 2citA 282 5.973 c.1.8.3 130499 2hqyA 305 10.96 1pvmA 184 12.71 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1nuiA 255 13.32 e.13.1.2,g.41.3.2 86194,86195 1pzsA 208 13.70 b.1.8.1 104397 1bywA 110 17.60 d.110.3.6 40912 2yvyA 278 17.66 2cy8A 453 18.85 1lzlA 323 19.14 c.69.1.2 78306 1tuhA 156 19.41 d.17.4.11 107345 2pblA 262 19.74 1svjA 156 20.56 d.220.1.1 106049 2epjA 434 20.84 2bngA 149 21.58 1nmsA 249 22.82 c.17.1.1 85879 1vkhA 273 23.12 c.69.1.32 108662 1a9xA 1058 23.14 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1q0eA 152 23.71 b.1.8.1 95504 3c8cA 240 26.80 1xtmA 175 27.55 1zfjA 491 28.36 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1u4nA 310 29.60 c.69.1.2 113021 2b25A 336 30.40 c.66.1.13 127699 1oalA 151 30.50 b.1.8.1 86739 2qkpA 151 31.55 1y791 680 31.99 1cs0A 1073 34.44 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1l3kA 196 34.76 d.58.7.1,d.58.7.1 73539,73540 2qggA 182 35.03 1s4iA 175 35.82 1r6xA 395 37.16 b.122.1.3,c.26.1.5 97167,97168 1e9pA 151 37.37 b.1.8.1 22215 1yloA 348 38.06 b.49.3.1,c.56.5.4 123659,123660 2ouxA 286 38.09 1f1gA 154 38.53 b.1.8.1 76153 2dnjA 260 38.91 d.151.1.1 41790 1ru8A 232 40.10 c.26.2.1 97849 2uubK 129 41.93 c.55.4.1 139942 1dd9A 338 42.83 e.13.1.1 43254 2b18A 164 42.85 2v0uA 146 44.23 1gsaA 316 44.68 c.30.1.3,d.142.1.1 31718,41477 1o50A 157 45.09 d.37.1.1,d.37.1.1 92478,92479 1n9lA 109 46.07 d.110.3.6 85468 1dxrH 258 46.44 b.41.1.1,f.23.10.1 25456,43433 2hk9A 275 47.06 1mfmA 153 48.40 b.1.8.1 22246 2p7jA 287 50.18 1vjfA 180 51.12 d.116.1.1 100809 2h30A 164 51.23 1vliA 385 51.43 b.85.1.1,c.1.10.6 108830,108831 2nycA 144 51.47 d.37.1.1 138812 2hvwA 184 53.61 1txnA 328 55.34 d.248.1.1 112779 1o54A 277 56.68 c.66.1.13 92482 2gj3A 120 57.31 1tca 317 58.11 2r85A 334 59.11 2b8eA 273 59.95 c.108.1.7,d.220.1.1 128068,128069 2b02A 119 60.00 2uv4A 152 60.07 2p5iA 288 62.52 2p9mA 138 62.77 1esoA 154 65.67 b.1.8.1 22293 2pd8A 149 65.87 1xsoA 150 67.19 b.1.8.1 22273 1nwwA 149 67.31 d.17.4.8 86306 2k0mA 104 67.79 1pu1A 94 68.31 d.266.1.1 104307 1gsoA 431 68.57 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2yziA 138 69.89 2vqeK 129 70.15 1eysH 259 72.64 b.41.1.1,f.23.10.1 25484,43517 1zh5A 195 73.73 a.4.5.46,d.58.7.1 125073,125074 1tkeA 224 74.06 d.15.10.1,d.67.1.1 112470,112471 1to4A 156 75.82 b.1.8.1 107162 1h6lA 353 77.38 b.68.3.1 60687 2ef7A 133 79.22 1y5hA 133 80.37 d.37.1.1,d.37.1.1 122635,122636 2dyuA 334 80.76 2vifA 141 81.20 1gsa 316 81.38 1q98A 165 81.78 c.47.1.10 96253 1vkiA 181 84.43 d.116.1.1 108664 1yt3A 375 87.40 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 2pdrA 149 88.62 1rzhH 260 89.63 b.41.1.1,f.23.10.1 98162,98163