# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 1.18e-15 d.108.1.1 123919 2z10A 194 3.76e-15 1nslA 184 4.77e-15 d.108.1.1 86137 2fckA 181 5.56e-15 d.108.1.1 133272 2fsrA 195 7.48e-15 d.108.1.1 134036 2oh1A 179 8.06e-15 2ge3A 170 1.55e-14 d.108.1.1 135044 1s7kA 182 2.74e-14 d.108.1.1 118878 1vhsA 175 2.87e-14 d.108.1.1 100698 1yk3A 210 3.43e-14 d.108.1.1 123493 2qmlA 198 3.93e-14 2prbA 196 4.21e-14 2r1iA 172 4.70e-14 1qsmA 152 5.36e-14 d.108.1.1 40808 2b5gA 171 5.36e-14 d.108.1.1 127892 2j8mA 172 5.82e-14 2cy2A 174 6.15e-14 d.108.1.1 131016 2fiaA 162 6.22e-14 d.108.1.1 133514 1yvoA 172 6.34e-14 d.108.1.1 124106 2fe7A 166 6.62e-14 d.108.1.1 133325 1yr0A 175 8.03e-14 d.108.1.1 123905 1tiqA 180 8.33e-14 d.108.1.1 107010 2cntA 160 8.58e-14 1s3zA 165 9.64e-14 d.108.1.1 105250 2fl4A 149 9.98e-14 d.108.1.1 133706 2ob0A 170 1.14e-13 1gheA 177 1.15e-13 d.108.1.1 76222 1mk4A 157 1.23e-13 d.108.1.1 84979 2ae6A 166 1.90e-13 d.108.1.1 126600 1on0A 158 1.94e-13 d.108.1.1 87095 2dxqA 150 2.36e-13 2i6cA 160 2.56e-13 d.108.1.1 137095 1sqhA 312 2.60e-13 d.108.1.5 98966 2pc1A 201 2.71e-13 2euiA 153 3.13e-13 d.108.1.1 132387 1z4eA 153 3.19e-13 d.108.1.1 124431 2pdoA 144 3.23e-13 1u6mA 199 3.55e-13 d.108.1.1 113069 2r7hA 177 5.28e-13 1z4rA 168 5.95e-13 d.108.1.1 124444 2i79A 172 6.28e-13 3c26A 266 6.82e-13 2q4vA 170 7.26e-13 d.108.1.1 139878 2o28A 184 8.14e-13 1xebA 150 1.24e-12 d.108.1.1 115219 1wwzA 159 1.91e-12 d.108.1.1 121380 1qstA 160 2.37e-12 d.108.1.1 40804 1yghA 164 2.55e-12 d.108.1.1 40802 2i00A 406 2.73e-12 2ft0A 235 2.85e-12 1yvkA 163 3.32e-12 d.108.1.1 124101 1i12A 160 4.65e-12 d.108.1.1 61515 2fiwA 172 4.70e-12 d.108.1.1 133539 1y7rA 133 5.06e-12 d.108.1.1 122716 1i1dA 161 5.41e-12 d.108.1.1 61526 1l0cA 207 5.43e-12 d.108.1.1 73393 2qecA 204 5.64e-12 2jdcA 146 6.32e-12 3blnA 143 6.49e-12 2ozgA 396 6.58e-12 2bswA 146 6.59e-12 d.108.1.1 129127 1y9kA 157 7.47e-12 d.108.1.1 122779 2q0yA 153 8.08e-12 1q2yA 140 9.64e-12 d.108.1.1 95655 1cjwA 166 1.20e-11 d.108.1.1 40818 2hv2A 400 1.22e-11 2ozhA 142 1.49e-11 1n71A 180 1.98e-11 d.108.1.1 85370 2ganA 190 2.71e-11 d.108.1.1 134889 1vkcA 158 2.73e-11 d.108.1.1 113663 2c27A 315 3.25e-11 d.108.1.1 129659 2atrA 138 3.53e-11 d.108.1.1 127305 1m4iA 181 4.60e-11 d.108.1.1 74457 1y9wA 140 5.28e-11 d.108.1.1 122783 1bo4A 168 7.00e-11 d.108.1.1 40798 1p0hA 318 8.41e-11 d.108.1.1 93866 1yx0A 159 8.63e-11 d.108.1.1 124168 2reeA 224 1.03e-10 1kuxA 207 1.28e-10 d.108.1.1 73021 2g3aA 152 2.11e-10 d.108.1.1 134557 2g0bA 198 8.36e-08 1ro5A 201 2.81e-06 d.108.1.3 105023 2r98A 456 2.17e-05 1kzfA 230 7.22e-05 d.108.1.3 73354 2aj6A 159 0.000116 d.108.1.1 126841 1ne9A 335 0.000996 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.001273 1yleA 342 0.007647 d.108.1.8 123647 1iicA 422 0.09647 d.108.1.2,d.108.1.2 62422,62423 1lrzA 426 0.3620 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1xmtA 103 0.4994 d.108.1.1 115561 1fy7A 278 0.7264 d.108.1.1 40817 2pq8A 278 0.8062 1bob 320 0.8138 2citA 282 1.092 c.1.8.3 130499 2givA 295 1.256 d.108.1.1 135253 1bobA 320 1.370 d.108.1.1 40816 2cxaA 256 1.661 d.108.1.6 130993 2hqyA 305 6.033 2p0wA 324 6.347 1nmsA 249 7.804 c.17.1.1 85879 1lzlA 323 7.921 c.69.1.2 78306 1yloA 348 8.789 b.49.3.1,c.56.5.4 123659,123660 1zfjA 491 15.15 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2pblA 262 15.57 1nuiA 255 17.58 e.13.1.2,g.41.3.2 86194,86195 1pvmA 184 22.99 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2uxyA 341 23.90 2dyuA 334 24.10 2ouxA 286 25.76 2b25A 336 27.41 c.66.1.13 127699 2nloA 302 27.62 2eb4A 267 28.16 1svjA 156 28.49 d.220.1.1 106049 3c8cA 240 29.14 1v4pA 157 30.78 d.67.1.2 113533 1zh5A 195 32.84 a.4.5.46,d.58.7.1 125073,125074 1vkhA 273 34.60 c.69.1.32 108662 1pzsA 208 34.88 b.1.8.1 104397 1mfmA 153 35.90 b.1.8.1 22246 1fxlA 167 37.21 d.58.7.1,d.58.7.1 39183,39184 2o16A 160 37.79 d.37.1.1,d.37.1.1 138869,138870 2bngA 149 39.11 2higA 487 39.53 1inpA 400 41.88 e.7.1.1 42972 1gteA 1025 42.74 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1acc 735 44.24 2fq6A 415 45.19 c.67.1.3 133939 2qddA 378 45.76 2uubK 129 47.55 c.55.4.1 139942 2yvyA 278 48.40 1gsaA 316 48.57 c.30.1.3,d.142.1.1 31718,41477 2yziA 138 50.26 1bywA 110 52.10 d.110.3.6 40912 2b8eA 273 52.18 c.108.1.7,d.220.1.1 128068,128069 2gxfA 142 52.88 2f68X 313 52.91 1l3kA 196 53.24 d.58.7.1,d.58.7.1 73539,73540 1tkeA 224 55.19 d.15.10.1,d.67.1.1 112470,112471 2fwhA 134 56.42 c.47.1.1 134242 2pjdA 343 57.15 2uwxA 494 58.06 e.3.1.1 140002 2r2nA 425 58.26 2dxnA 274 60.03 3bt7A 369 60.27 1k77A 260 60.92 c.1.15.5 72096 3bi1A 709 61.86 1zzmA 259 62.88 c.1.9.12 125911 2o18A 340 64.89 2hyxA 352 68.49 1kllA 130 70.16 d.32.1.2 72720 1gsoA 431 71.04 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1q8iA 783 75.04 c.55.3.5,e.8.1.1 96208,96209 2hvwA 184 75.11 1jp4A 308 76.28 e.7.1.1 63223 2qfjA 216 76.52 2dkoA 146 77.19 1fnoA 417 78.45 d.58.19.1,c.56.5.4 70145,75841 1nwwA 149 80.32 d.17.4.8 86306 2vqeK 129 80.50 1mnaA 298 80.64 c.69.1.22 79322 1knbA 196 80.69 b.21.1.1 23841 2basA 431 80.80 c.1.33.1,d.110.6.2 128244,128245 1sz2A 332 81.11 c.55.1.7 112169 2nvwA 479 81.73 c.2.1.3,d.81.1.5 138665,138666 2pdrA 149 81.90 2ywkA 95 81.93 2p5iA 288 83.59 2h8lA 252 84.36 1o54A 277 84.66 c.66.1.13 92482 2k0mA 104 84.99 2fp3A 316 85.01 1jkmA 358 85.30 c.69.1.2 34633 2ch5A 347 85.43 c.55.1.5,c.55.1.5 130453,130454 1gsa 316 85.76 2qggA 182 88.35 2pb2A 420 89.52 2bdqA 224 89.64