# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 1.11e-18 d.108.1.1 123919 1nslA 184 2.45e-18 d.108.1.1 86137 2z10A 194 3.60e-18 2fckA 181 3.63e-18 d.108.1.1 133272 2fsrA 195 5.19e-18 d.108.1.1 134036 2oh1A 179 7.03e-18 2ge3A 170 1.31e-17 d.108.1.1 135044 1s7kA 182 2.11e-17 d.108.1.1 118878 1yk3A 210 3.25e-17 d.108.1.1 123493 1vhsA 175 3.76e-17 d.108.1.1 100698 2prbA 196 4.43e-17 2qmlA 198 4.93e-17 1qsmA 152 6.17e-17 d.108.1.1 40808 2r1iA 172 6.37e-17 2b5gA 171 6.44e-17 d.108.1.1 127892 2j8mA 172 6.52e-17 2fe7A 166 7.84e-17 d.108.1.1 133325 2cy2A 174 9.94e-17 d.108.1.1 131016 2fl4A 149 1.03e-16 d.108.1.1 133706 1yr0A 175 1.10e-16 d.108.1.1 123905 2ob0A 170 1.16e-16 1yvoA 172 1.17e-16 d.108.1.1 124106 2fiaA 162 1.24e-16 d.108.1.1 133514 1tiqA 180 1.67e-16 d.108.1.1 107010 1mk4A 157 1.87e-16 d.108.1.1 84979 1s3zA 165 2.05e-16 d.108.1.1 105250 1on0A 158 3.18e-16 d.108.1.1 87095 2cntA 160 3.27e-16 2i6cA 160 3.45e-16 d.108.1.1 137095 1gheA 177 3.48e-16 d.108.1.1 76222 2ae6A 166 4.06e-16 d.108.1.1 126600 2dxqA 150 4.48e-16 1z4eA 153 4.69e-16 d.108.1.1 124431 2pdoA 144 5.05e-16 1u6mA 199 6.93e-16 d.108.1.1 113069 2euiA 153 8.53e-16 d.108.1.1 132387 1sqhA 312 8.99e-16 d.108.1.5 98966 2pc1A 201 1.13e-15 2i79A 172 1.22e-15 2r7hA 177 1.63e-15 2q4vA 170 1.71e-15 d.108.1.1 139878 2hv2A 400 1.77e-15 3c26A 266 1.89e-15 2o28A 184 2.03e-15 1z4rA 168 3.28e-15 d.108.1.1 124444 1xebA 150 3.39e-15 d.108.1.1 115219 1wwzA 159 4.42e-15 d.108.1.1 121380 1cjwA 166 4.59e-15 d.108.1.1 40818 2ft0A 235 7.72e-15 2reeA 224 7.88e-15 1yghA 164 9.57e-15 d.108.1.1 40802 2i00A 406 1.00e-14 1yvkA 163 1.11e-14 d.108.1.1 124101 1qstA 160 1.31e-14 d.108.1.1 40804 1i12A 160 1.53e-14 d.108.1.1 61515 1y7rA 133 1.54e-14 d.108.1.1 122716 3blnA 143 1.75e-14 1i1dA 161 2.23e-14 d.108.1.1 61526 2fiwA 172 2.30e-14 d.108.1.1 133539 1l0cA 207 2.44e-14 d.108.1.1 73393 2bswA 146 2.47e-14 d.108.1.1 129127 1y9kA 157 2.50e-14 d.108.1.1 122779 2jdcA 146 2.75e-14 1kuxA 207 2.78e-14 d.108.1.1 73021 2q0yA 153 2.85e-14 2ganA 190 3.03e-14 d.108.1.1 134889 2qecA 204 3.16e-14 2ozgA 396 3.74e-14 1q2yA 140 4.65e-14 d.108.1.1 95655 2c27A 315 5.69e-14 d.108.1.1 129659 2ozhA 142 7.24e-14 1p0hA 318 8.22e-14 d.108.1.1 93866 1vkcA 158 1.77e-13 d.108.1.1 113663 2atrA 138 2.07e-13 d.108.1.1 127305 1m4iA 181 2.23e-13 d.108.1.1 74457 1y9wA 140 2.59e-13 d.108.1.1 122783 1n71A 180 2.99e-13 d.108.1.1 85370 1bo4A 168 4.43e-13 d.108.1.1 40798 1yx0A 159 4.82e-13 d.108.1.1 124168 2g3aA 152 1.29e-12 d.108.1.1 134557 2g0bA 198 3.63e-09 2r98A 456 1.60e-07 1ro5A 201 2.77e-07 d.108.1.3 105023 1kzfA 230 7.58e-06 d.108.1.3 73354 2aj6A 159 9.56e-06 d.108.1.1 126841 2q04A 211 7.11e-05 1ne9A 335 0.000102 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.000817 d.108.1.8 123647 1iicA 422 0.007782 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.1495 d.108.1.1 115561 2givA 295 0.1874 d.108.1.1 135253 2pq8A 278 0.2938 1bob 320 0.4287 1lrzA 426 0.5181 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1fy7A 278 0.5829 d.108.1.1 40817 1bobA 320 0.6829 d.108.1.1 40816 2citA 282 3.626 c.1.8.3 130499 2cxaA 256 8.455 d.108.1.6 130993 2p0wA 324 10.19 1nmsA 249 10.34 c.17.1.1 85879 2pblA 262 11.34 1vkhA 273 14.14 c.69.1.32 108662 1nuiA 255 14.54 e.13.1.2,g.41.3.2 86194,86195 1pvmA 184 15.93 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1tuhA 156 16.71 d.17.4.11 107345 1lzlA 323 17.26 c.69.1.2 78306 2hqyA 305 19.37 2cy8A 453 21.35 1pzsA 208 21.62 b.1.8.1 104397 1svjA 156 21.99 d.220.1.1 106049 1q0eA 152 22.62 b.1.8.1 95504 2epjA 434 23.93 1u4nA 310 24.09 c.69.1.2 113021 2dnjA 260 25.68 d.151.1.1 41790 1yloA 348 26.00 b.49.3.1,c.56.5.4 123659,123660 1l3kA 196 28.37 d.58.7.1,d.58.7.1 73539,73540 2qggA 182 29.70 2bngA 149 33.18 1e9pA 151 33.29 b.1.8.1 22215 1ru8A 232 33.30 c.26.2.1 97849 2yvyA 278 33.74 1xtmA 175 34.40 1oalA 151 35.14 b.1.8.1 86739 1f1gA 154 36.52 b.1.8.1 76153 3c8cA 240 37.01 2b25A 336 37.60 c.66.1.13 127699 1mfmA 153 38.50 b.1.8.1 22246 1a9xA 1058 39.47 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2hvwA 184 40.06 2b18A 164 40.17 1vliA 385 42.03 b.85.1.1,c.1.10.6 108830,108831 1tca 317 42.54 2dkoA 146 43.24 1gsaA 316 43.80 c.30.1.3,d.142.1.1 31718,41477 1o54A 277 44.89 c.66.1.13 92482 2uubK 129 45.51 c.55.4.1 139942 1pu1A 94 45.70 d.266.1.1 104307 1zfjA 491 49.20 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1bywA 110 53.08 d.110.3.6 40912 2b8eA 273 53.32 c.108.1.7,d.220.1.1 128068,128069 1tkeA 224 54.59 d.15.10.1,d.67.1.1 112470,112471 2qkpA 151 54.75 2k0mA 104 56.37 1s4iA 175 56.66 2r85A 334 61.64 2p5iA 288 64.60 1xsoA 150 65.04 b.1.8.1 22273 1to4A 156 65.92 b.1.8.1 107162 2vqeK 129 66.11 1o50A 157 66.22 d.37.1.1,d.37.1.1 92478,92479 1nwwA 149 66.59 d.17.4.8 86306 1r6xA 395 67.33 b.122.1.3,c.26.1.5 97167,97168 1cs0A 1073 68.00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1esoA 154 70.13 b.1.8.1 22293 2fp3A 316 72.21 1dd9A 338 72.41 e.13.1.1 43254 1dxrH 258 73.23 b.41.1.1,f.23.10.1 25456,43433 1vjfA 180 73.83 d.116.1.1 100809 2ouxA 286 76.02 2gx5A 170 76.48 1txnA 328 77.01 d.248.1.1 112779 1gsa 316 78.33 2vifA 141 80.31 2qfjA 216 83.13 2b02A 119 84.53 2hfkA 319 84.63 2hk9A 275 86.30 1y791 680 89.67