# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 8.51e-18 d.108.1.1 123919 1nslA 184 8.88e-18 d.108.1.1 86137 2z10A 194 1.27e-17 2fckA 181 2.61e-17 d.108.1.1 133272 2oh1A 179 6.18e-17 2fsrA 195 6.29e-17 d.108.1.1 134036 1s7kA 182 1.46e-16 d.108.1.1 118878 2ge3A 170 2.19e-16 d.108.1.1 135044 1yk3A 210 2.19e-16 d.108.1.1 123493 1vhsA 175 2.66e-16 d.108.1.1 100698 1qsmA 152 4.12e-16 d.108.1.1 40808 2qmlA 198 6.12e-16 2fl4A 149 6.31e-16 d.108.1.1 133706 2fiaA 162 7.61e-16 d.108.1.1 133514 2b5gA 171 7.65e-16 d.108.1.1 127892 2r1iA 172 7.71e-16 2ob0A 170 8.77e-16 2fe7A 166 8.85e-16 d.108.1.1 133325 2prbA 196 1.03e-15 1yr0A 175 1.06e-15 d.108.1.1 123905 2j8mA 172 1.25e-15 2i6cA 160 1.51e-15 d.108.1.1 137095 2cy2A 174 1.57e-15 d.108.1.1 131016 1tiqA 180 1.83e-15 d.108.1.1 107010 1mk4A 157 2.42e-15 d.108.1.1 84979 1s3zA 165 2.52e-15 d.108.1.1 105250 2ae6A 166 2.86e-15 d.108.1.1 126600 1yvoA 172 2.97e-15 d.108.1.1 124106 2pdoA 144 3.42e-15 1u6mA 199 3.86e-15 d.108.1.1 113069 1gheA 177 4.05e-15 d.108.1.1 76222 1on0A 158 4.11e-15 d.108.1.1 87095 2dxqA 150 5.39e-15 2q4vA 170 5.80e-15 d.108.1.1 139878 2cntA 160 6.22e-15 2pc1A 201 6.43e-15 1sqhA 312 6.47e-15 d.108.1.5 98966 2euiA 153 6.81e-15 d.108.1.1 132387 1z4eA 153 7.20e-15 d.108.1.1 124431 1xebA 150 1.04e-14 d.108.1.1 115219 2o28A 184 1.05e-14 2i79A 172 1.06e-14 2hv2A 400 1.33e-14 2r7hA 177 1.68e-14 3c26A 266 1.82e-14 1z4rA 168 2.07e-14 d.108.1.1 124444 1wwzA 159 2.69e-14 d.108.1.1 121380 2reeA 224 3.64e-14 1cjwA 166 4.53e-14 d.108.1.1 40818 1yghA 164 4.74e-14 d.108.1.1 40802 2jdcA 146 5.40e-14 1yvkA 163 5.61e-14 d.108.1.1 124101 2i00A 406 6.06e-14 1i1dA 161 6.38e-14 d.108.1.1 61526 2ganA 190 7.15e-14 d.108.1.1 134889 2ft0A 235 7.58e-14 1y7rA 133 8.24e-14 d.108.1.1 122716 2bswA 146 1.14e-13 d.108.1.1 129127 1l0cA 207 1.18e-13 d.108.1.1 73393 1qstA 160 1.19e-13 d.108.1.1 40804 1i12A 160 1.24e-13 d.108.1.1 61515 2fiwA 172 1.35e-13 d.108.1.1 133539 3blnA 143 1.35e-13 1y9kA 157 1.43e-13 d.108.1.1 122779 2q0yA 153 1.65e-13 1q2yA 140 1.71e-13 d.108.1.1 95655 2ozhA 142 2.00e-13 1kuxA 207 2.09e-13 d.108.1.1 73021 2ozgA 396 2.27e-13 2qecA 204 3.11e-13 2atrA 138 4.61e-13 d.108.1.1 127305 2c27A 315 6.50e-13 d.108.1.1 129659 1n71A 180 8.95e-13 d.108.1.1 85370 1m4iA 181 9.40e-13 d.108.1.1 74457 1p0hA 318 1.10e-12 d.108.1.1 93866 1y9wA 140 1.40e-12 d.108.1.1 122783 1vkcA 158 1.46e-12 d.108.1.1 113663 1yx0A 159 1.53e-12 d.108.1.1 124168 1bo4A 168 6.32e-12 d.108.1.1 40798 2g3aA 152 6.34e-12 d.108.1.1 134557 2g0bA 198 6.80e-09 2r98A 456 3.99e-07 1ro5A 201 7.25e-07 d.108.1.3 105023 1kzfA 230 1.02e-05 d.108.1.3 73354 2aj6A 159 2.80e-05 d.108.1.1 126841 1ne9A 335 0.000306 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.000624 1yleA 342 0.001586 d.108.1.8 123647 1iicA 422 0.009409 d.108.1.2,d.108.1.2 62422,62423 2givA 295 0.4645 d.108.1.1 135253 1xmtA 103 0.8416 d.108.1.1 115561 1lrzA 426 0.8856 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1fy7A 278 2.143 d.108.1.1 40817 2pq8A 278 2.177 1bob 320 2.571 1nuiA 255 6.597 e.13.1.2,g.41.3.2 86194,86195 1tuhA 156 12.94 d.17.4.11 107345 1bobA 320 17.06 d.108.1.1 40816 2qggA 182 18.64 2r85A 334 20.92 2citA 282 21.42 c.1.8.3 130499 1nmsA 249 25.02 c.17.1.1 85879 1l3kA 196 25.57 d.58.7.1,d.58.7.1 73539,73540 1svjA 156 25.96 d.220.1.1 106049 1yloA 348 27.85 b.49.3.1,c.56.5.4 123659,123660 1u4nA 310 28.17 c.69.1.2 113021 1lzlA 323 30.39 c.69.1.2 78306 1ru8A 232 32.60 c.26.2.1 97849 2c42A 1231 33.46 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2pblA 262 37.59 1q0eA 152 38.36 b.1.8.1 95504 2bngA 149 38.68 1r6xA 395 39.01 b.122.1.3,c.26.1.5 97167,97168 2hfkA 319 43.26 1y791 680 46.70 1nwwA 149 50.25 d.17.4.8 86306 1bywA 110 50.40 d.110.3.6 40912 2epjA 434 51.80 1e9pA 151 54.27 b.1.8.1 22215 2b8eA 273 55.36 c.108.1.7,d.220.1.1 128068,128069 1xtoA 311 58.47 d.157.1.6 116030 1dd9A 338 59.49 e.13.1.1 43254 1pu1A 94 59.87 d.266.1.1 104307 2cxaA 256 60.46 d.108.1.6 130993 1o50A 157 61.04 d.37.1.1,d.37.1.1 92478,92479 2yvyA 278 62.00 1vkhA 273 62.60 c.69.1.32 108662 1f1gA 154 62.94 b.1.8.1 76153 2ouxA 286 64.26 1tca 317 65.33 1h7zA 194 67.22 b.21.1.1 60733 1pvmA 184 67.24 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1mfmA 153 67.29 b.1.8.1 22246 2c2iA 151 67.73 d.38.1.4 129670 3c8cA 240 71.28 1zh5A 195 73.34 a.4.5.46,d.58.7.1 125073,125074 2qfjA 216 73.52 1tkeA 224 73.75 d.15.10.1,d.67.1.1 112470,112471 1q98A 165 76.32 c.47.1.10 96253 1zfjA 491 78.35 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2dkoA 146 79.66 1f6yA 262 81.11 c.1.21.2 29673 2dnjA 260 81.65 d.151.1.1 41790 1vr9A 213 82.06 d.37.1.1,d.37.1.1 120446,120447 1sc3A 178 83.54 c.17.1.1 105416 1e87A 118 89.85 d.169.1.1 42327