# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nslA 184 1.78e-18 d.108.1.1 86137 1yreA 197 2.49e-18 d.108.1.1 123919 2z10A 194 3.94e-18 2fckA 181 5.96e-18 d.108.1.1 133272 2oh1A 179 8.01e-18 2fsrA 195 1.51e-17 d.108.1.1 134036 1s7kA 182 2.64e-17 d.108.1.1 118878 1yk3A 210 5.00e-17 d.108.1.1 123493 2qmlA 198 5.97e-17 1vhsA 175 6.05e-17 d.108.1.1 100698 2ge3A 170 6.39e-17 d.108.1.1 135044 1qsmA 152 6.90e-17 d.108.1.1 40808 2prbA 196 8.79e-17 2b5gA 171 9.68e-17 d.108.1.1 127892 2fl4A 149 1.27e-16 d.108.1.1 133706 2fe7A 166 1.51e-16 d.108.1.1 133325 1yr0A 175 1.52e-16 d.108.1.1 123905 2cy2A 174 1.58e-16 d.108.1.1 131016 1tiqA 180 1.92e-16 d.108.1.1 107010 2ob0A 170 1.93e-16 2r1iA 172 1.97e-16 2fiaA 162 2.03e-16 d.108.1.1 133514 2j8mA 172 2.11e-16 2i6cA 160 2.79e-16 d.108.1.1 137095 1mk4A 157 3.34e-16 d.108.1.1 84979 1s3zA 165 4.06e-16 d.108.1.1 105250 1yvoA 172 4.34e-16 d.108.1.1 124106 1on0A 158 4.85e-16 d.108.1.1 87095 1u6mA 199 6.20e-16 d.108.1.1 113069 2ae6A 166 6.39e-16 d.108.1.1 126600 2cntA 160 7.21e-16 1gheA 177 7.29e-16 d.108.1.1 76222 1z4eA 153 8.11e-16 d.108.1.1 124431 2dxqA 150 8.48e-16 2q4vA 170 1.12e-15 d.108.1.1 139878 2pdoA 144 1.22e-15 1sqhA 312 1.33e-15 d.108.1.5 98966 2i79A 172 1.39e-15 2euiA 153 1.69e-15 d.108.1.1 132387 2o28A 184 2.00e-15 2r7hA 177 2.13e-15 1xebA 150 2.56e-15 d.108.1.1 115219 3c26A 266 2.84e-15 2hv2A 400 3.45e-15 1z4rA 168 3.83e-15 d.108.1.1 124444 2pc1A 201 3.93e-15 1wwzA 159 5.56e-15 d.108.1.1 121380 1cjwA 166 8.32e-15 d.108.1.1 40818 2reeA 224 9.28e-15 1yvkA 163 9.36e-15 d.108.1.1 124101 2ft0A 235 1.02e-14 1y9kA 157 1.43e-14 d.108.1.1 122779 2jdcA 146 1.57e-14 1i1dA 161 1.71e-14 d.108.1.1 61526 1yghA 164 1.74e-14 d.108.1.1 40802 2q0yA 153 1.81e-14 2i00A 406 1.84e-14 2fiwA 172 2.14e-14 d.108.1.1 133539 2ganA 190 2.19e-14 d.108.1.1 134889 1qstA 160 2.38e-14 d.108.1.1 40804 2bswA 146 2.52e-14 d.108.1.1 129127 1i12A 160 2.63e-14 d.108.1.1 61515 1y7rA 133 3.05e-14 d.108.1.1 122716 1q2yA 140 3.89e-14 d.108.1.1 95655 3blnA 143 4.02e-14 2qecA 204 4.65e-14 2ozhA 142 4.70e-14 1l0cA 207 5.25e-14 d.108.1.1 73393 1kuxA 207 5.58e-14 d.108.1.1 73021 2c27A 315 6.99e-14 d.108.1.1 129659 2ozgA 396 7.18e-14 2atrA 138 1.20e-13 d.108.1.1 127305 1p0hA 318 1.55e-13 d.108.1.1 93866 1vkcA 158 1.77e-13 d.108.1.1 113663 1y9wA 140 1.82e-13 d.108.1.1 122783 1n71A 180 2.89e-13 d.108.1.1 85370 1m4iA 181 4.32e-13 d.108.1.1 74457 1yx0A 159 4.47e-13 d.108.1.1 124168 1bo4A 168 9.67e-13 d.108.1.1 40798 2g3aA 152 1.61e-12 d.108.1.1 134557 2g0bA 198 2.85e-09 2r98A 456 7.09e-08 1ro5A 201 1.76e-07 d.108.1.3 105023 1kzfA 230 6.38e-06 d.108.1.3 73354 2aj6A 159 8.64e-06 d.108.1.1 126841 2q04A 211 0.000136 1ne9A 335 0.000193 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.000925 d.108.1.8 123647 1iicA 422 0.003717 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.1561 d.108.1.1 115561 1lrzA 426 0.3063 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2givA 295 0.3280 d.108.1.1 135253 2pq8A 278 0.5819 1bob 320 1.083 1fy7A 278 1.217 d.108.1.1 40817 1bobA 320 5.142 d.108.1.1 40816 1nuiA 255 6.674 e.13.1.2,g.41.3.2 86194,86195 1lzlA 323 13.22 c.69.1.2 78306 1tuhA 156 14.10 d.17.4.11 107345 1y791 680 20.37 2p0wA 324 22.84 2citA 282 23.03 c.1.8.3 130499 1nmsA 249 25.69 c.17.1.1 85879 1pvmA 184 25.75 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2b8eA 273 26.41 c.108.1.7,d.220.1.1 128068,128069 1u4nA 310 28.90 c.69.1.2 113021 1xtmA 175 29.20 1l3kA 196 30.25 d.58.7.1,d.58.7.1 73539,73540 3c8cA 240 31.60 2yvyA 278 32.93 1pu1A 94 33.13 d.266.1.1 104307 1pzsA 208 33.48 b.1.8.1 104397 2ouxA 286 33.59 2pblA 262 38.85 2r85A 334 39.33 2c42A 1231 40.97 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1q0eA 152 41.67 b.1.8.1 95504 2qkpA 151 41.74 1e9pA 151 42.06 b.1.8.1 22215 2dnjA 260 42.46 d.151.1.1 41790 2cxaA 256 42.98 d.108.1.6 130993 1ru8A 232 43.32 c.26.2.1 97849 1s4iA 175 43.61 1tkeA 224 44.74 d.15.10.1,d.67.1.1 112470,112471 1svjA 156 45.47 d.220.1.1 106049 1nwwA 149 45.50 d.17.4.8 86306 2bngA 149 46.15 2b02A 119 46.37 1o50A 157 47.16 d.37.1.1,d.37.1.1 92478,92479 2hqyA 305 48.99 1oalA 151 49.11 b.1.8.1 86739 1zfjA 491 50.34 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2epjA 434 50.92 1vkhA 273 51.23 c.69.1.32 108662 1bywA 110 52.22 d.110.3.6 40912 2hvwA 184 52.45 1dd9A 338 53.75 e.13.1.1 43254 1vr9A 213 54.08 d.37.1.1,d.37.1.1 120446,120447 2p7jA 287 57.42 2bpdA 142 59.16 1y5hA 133 59.73 d.37.1.1,d.37.1.1 122635,122636 1eysH 259 60.78 b.41.1.1,f.23.10.1 25484,43517 2hfkA 319 62.88 2uubK 129 63.01 c.55.4.1 139942 2bphA 140 63.75 1tca 317 64.44 1yloA 348 65.07 b.49.3.1,c.56.5.4 123659,123660 1npyA 271 68.91 c.2.1.7,c.58.1.5 85995,85996 2nycA 144 68.99 d.37.1.1 138812 2hk9A 275 70.27 2p9mA 138 70.69 1f1gA 154 73.39 b.1.8.1 76153 2rc3A 135 74.70 2vqeK 129 75.52 1e87A 118 79.64 d.169.1.1 42327 2ef7A 133 79.92 1r6xA 395 79.94 b.122.1.3,c.26.1.5 97167,97168 2k0mA 104 80.30 1mfmA 153 82.16 b.1.8.1 22246 1x0oA 119 82.35 2pb2A 420 82.77 2ob3A 330 83.01 1nvtA 287 83.91 c.2.1.7,c.58.1.5 86270,86271 1esoA 154 86.10 b.1.8.1 22293 1jkmA 358 86.31 c.69.1.2 34633 1eu8A 409 86.44 c.94.1.1 59502 2dkoA 146 87.10 1ohpA 125 89.22 d.17.4.3 118702 1xsoA 150 89.55 b.1.8.1 22273 1yavA 159 89.70 d.37.1.1,d.37.1.1 116595,116596