# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yreA 197 1.01e-18 d.108.1.1 123919 1nslA 184 2.15e-18 d.108.1.1 86137 2z10A 194 2.79e-18 2fckA 181 4.53e-18 d.108.1.1 133272 2oh1A 179 7.95e-18 2fsrA 195 1.13e-17 d.108.1.1 134036 1s7kA 182 1.82e-17 d.108.1.1 118878 1vhsA 175 4.00e-17 d.108.1.1 100698 2ge3A 170 5.59e-17 d.108.1.1 135044 2qmlA 198 8.63e-17 2prbA 196 8.64e-17 1qsmA 152 8.66e-17 d.108.1.1 40808 1yk3A 210 8.89e-17 d.108.1.1 123493 2fl4A 149 1.15e-16 d.108.1.1 133706 2j8mA 172 1.24e-16 1yr0A 175 1.55e-16 d.108.1.1 123905 2fe7A 166 1.67e-16 d.108.1.1 133325 2fiaA 162 1.70e-16 d.108.1.1 133514 2b5gA 171 1.76e-16 d.108.1.1 127892 2cy2A 174 1.84e-16 d.108.1.1 131016 2ob0A 170 2.13e-16 2r1iA 172 2.20e-16 1yvoA 172 2.35e-16 d.108.1.1 124106 1tiqA 180 2.54e-16 d.108.1.1 107010 2ae6A 166 3.36e-16 d.108.1.1 126600 2i6cA 160 4.02e-16 d.108.1.1 137095 1on0A 158 4.07e-16 d.108.1.1 87095 1mk4A 157 5.14e-16 d.108.1.1 84979 1s3zA 165 5.63e-16 d.108.1.1 105250 1u6mA 199 6.82e-16 d.108.1.1 113069 1gheA 177 7.85e-16 d.108.1.1 76222 2cntA 160 8.09e-16 2pdoA 144 1.00e-15 1z4eA 153 1.11e-15 d.108.1.1 124431 2dxqA 150 1.21e-15 2q4vA 170 1.37e-15 d.108.1.1 139878 2i79A 172 1.62e-15 2r7hA 177 1.76e-15 2euiA 153 2.16e-15 d.108.1.1 132387 1sqhA 312 2.43e-15 d.108.1.5 98966 2o28A 184 2.44e-15 2hv2A 400 3.01e-15 2pc1A 201 3.09e-15 1xebA 150 3.60e-15 d.108.1.1 115219 3c26A 266 4.48e-15 2reeA 224 5.98e-15 1z4rA 168 6.75e-15 d.108.1.1 124444 1wwzA 159 6.79e-15 d.108.1.1 121380 1cjwA 166 7.65e-15 d.108.1.1 40818 2ft0A 235 1.02e-14 1yvkA 163 1.23e-14 d.108.1.1 124101 1i1dA 161 1.34e-14 d.108.1.1 61526 2i00A 406 1.35e-14 1yghA 164 1.58e-14 d.108.1.1 40802 2jdcA 146 1.74e-14 2fiwA 172 2.13e-14 d.108.1.1 133539 1i12A 160 2.34e-14 d.108.1.1 61515 1y7rA 133 2.76e-14 d.108.1.1 122716 1qstA 160 2.86e-14 d.108.1.1 40804 1y9kA 157 2.87e-14 d.108.1.1 122779 2ganA 190 3.04e-14 d.108.1.1 134889 1l0cA 207 3.18e-14 d.108.1.1 73393 2bswA 146 3.42e-14 d.108.1.1 129127 2ozgA 396 3.49e-14 2q0yA 153 3.58e-14 3blnA 143 3.96e-14 1kuxA 207 3.98e-14 d.108.1.1 73021 2ozhA 142 4.01e-14 1q2yA 140 5.37e-14 d.108.1.1 95655 2qecA 204 5.82e-14 2c27A 315 6.20e-14 d.108.1.1 129659 2atrA 138 1.22e-13 d.108.1.1 127305 1vkcA 158 1.39e-13 d.108.1.1 113663 1p0hA 318 3.02e-13 d.108.1.1 93866 1n71A 180 3.32e-13 d.108.1.1 85370 1y9wA 140 3.78e-13 d.108.1.1 122783 1m4iA 181 3.88e-13 d.108.1.1 74457 1yx0A 159 6.44e-13 d.108.1.1 124168 1bo4A 168 1.25e-12 d.108.1.1 40798 2g3aA 152 1.76e-12 d.108.1.1 134557 2g0bA 198 2.89e-09 2r98A 456 5.35e-08 1ro5A 201 4.41e-07 d.108.1.3 105023 1kzfA 230 8.88e-06 d.108.1.3 73354 2aj6A 159 1.03e-05 d.108.1.1 126841 1ne9A 335 0.000215 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.000333 1yleA 342 0.000372 d.108.1.8 123647 1iicA 422 0.003512 d.108.1.2,d.108.1.2 62422,62423 2givA 295 0.1601 d.108.1.1 135253 1lrzA 426 0.2371 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1xmtA 103 0.2376 d.108.1.1 115561 1fy7A 278 0.6009 d.108.1.1 40817 2pq8A 278 0.9704 1bob 320 1.325 1nuiA 255 4.507 e.13.1.2,g.41.3.2 86194,86195 1bobA 320 8.928 d.108.1.1 40816 1svjA 156 15.52 d.220.1.1 106049 1tuhA 156 16.10 d.17.4.11 107345 1l3kA 196 17.63 d.58.7.1,d.58.7.1 73539,73540 2citA 282 19.17 c.1.8.3 130499 1bywA 110 22.44 d.110.3.6 40912 1lzlA 323 22.74 c.69.1.2 78306 2ouxA 286 24.10 1nmsA 249 24.51 c.17.1.1 85879 1dd9A 338 28.45 e.13.1.1 43254 1pvmA 184 28.48 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2r85A 334 28.84 1y791 680 29.14 2bphA 140 29.99 2bpdA 142 30.48 1u4nA 310 31.01 c.69.1.2 113021 2bngA 149 31.20 2qggA 182 31.27 2cxaA 256 32.15 d.108.1.6 130993 1zfjA 491 32.52 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2c42A 1231 34.54 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2qkpA 151 35.00 2p0wA 324 35.70 2epjA 434 36.39 2yvyA 278 36.84 1tkeA 224 38.55 d.15.10.1,d.67.1.1 112470,112471 2hvwA 184 38.85 1q0eA 152 39.14 b.1.8.1 95504 1yloA 348 40.50 b.49.3.1,c.56.5.4 123659,123660 1xtmA 175 40.53 2pblA 262 41.92 1ru8A 232 42.02 c.26.2.1 97849 2b8eA 273 43.15 c.108.1.7,d.220.1.1 128068,128069 1r6xA 395 44.06 b.122.1.3,c.26.1.5 97167,97168 1oalA 151 44.96 b.1.8.1 86739 1f1gA 154 45.09 b.1.8.1 76153 1nwwA 149 45.13 d.17.4.8 86306 1e87A 118 45.86 d.169.1.1 42327 1xtoA 311 45.89 d.157.1.6 116030 1tca 317 46.33 1o50A 157 46.73 d.37.1.1,d.37.1.1 92478,92479 3c8cA 240 47.35 2hfkA 319 50.55 1s4iA 175 52.08 1e9pA 151 54.92 b.1.8.1 22215 1pu1A 94 56.83 d.266.1.1 104307 2dnjA 260 57.91 d.151.1.1 41790 2p7jA 287 61.48 1vkhA 273 63.46 c.69.1.32 108662 1vr9A 213 64.49 d.37.1.1,d.37.1.1 120446,120447 2b02A 119 65.46 1x0oA 119 65.78 2b25A 336 67.31 c.66.1.13 127699 1v4pA 157 68.33 d.67.1.2 113533 1pzsA 208 69.67 b.1.8.1 104397 1yavA 159 70.45 d.37.1.1,d.37.1.1 116595,116596 2nycA 144 71.39 d.37.1.1 138812 1esoA 154 74.87 b.1.8.1 22293 1nvtA 287 75.20 c.2.1.7,c.58.1.5 86270,86271 1zh5A 195 75.21 a.4.5.46,d.58.7.1 125073,125074 2rc3A 135 75.98 1mfmA 153 76.91 b.1.8.1 22246 2k0mA 104 77.03 1h6lA 353 79.86 b.68.3.1 60687 2c2iA 151 82.65 d.38.1.4 129670 2hk9A 275 83.23 1q98A 165 85.21 c.47.1.10 96253 2fp3A 316 86.03 2go9A 161 86.71 2p9mA 138 88.97