# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nslA 184 1.57e-18 d.108.1.1 86137 2z10A 194 3.66e-18 1yreA 197 3.67e-18 d.108.1.1 123919 2fckA 181 1.13e-17 d.108.1.1 133272 2fsrA 195 2.60e-17 d.108.1.1 134036 2oh1A 179 6.05e-17 1s7kA 182 1.20e-16 d.108.1.1 118878 2ge3A 170 1.95e-16 d.108.1.1 135044 2qmlA 198 2.80e-16 1vhsA 175 2.92e-16 d.108.1.1 100698 2prbA 196 3.02e-16 2j8mA 172 3.61e-16 1yk3A 210 3.62e-16 d.108.1.1 123493 1yr0A 175 6.00e-16 d.108.1.1 123905 1yvoA 172 7.58e-16 d.108.1.1 124106 2cy2A 174 1.36e-15 d.108.1.1 131016 2i6cA 160 1.45e-15 d.108.1.1 137095 2pc1A 201 1.86e-15 2ob0A 170 1.94e-15 1tiqA 180 2.28e-15 d.108.1.1 107010 2fiaA 162 4.40e-15 d.108.1.1 133514 2r1iA 172 4.76e-15 1qsmA 152 5.95e-15 d.108.1.1 40808 2cntA 160 9.03e-15 1mk4A 157 9.29e-15 d.108.1.1 84979 1gheA 177 1.06e-14 d.108.1.1 76222 2o28A 184 1.38e-14 1s3zA 165 1.42e-14 d.108.1.1 105250 2ae6A 166 1.95e-14 d.108.1.1 126600 2hv2A 400 2.80e-14 2dxqA 150 2.85e-14 2i79A 172 3.80e-14 1wwzA 159 4.48e-14 d.108.1.1 121380 1cjwA 166 5.25e-14 d.108.1.1 40818 1l0cA 207 5.34e-14 d.108.1.1 73393 2r7hA 177 5.92e-14 1u6mA 199 6.44e-14 d.108.1.1 113069 1sqhA 312 6.72e-14 d.108.1.5 98966 3c26A 266 7.11e-14 3blnA 143 7.64e-14 1z4eA 153 8.40e-14 d.108.1.1 124431 2b5gA 171 9.19e-14 d.108.1.1 127892 2fe7A 166 9.42e-14 d.108.1.1 133325 1yghA 164 9.46e-14 d.108.1.1 40802 1z4rA 168 1.05e-13 d.108.1.1 124444 2qecA 204 1.10e-13 1on0A 158 1.21e-13 d.108.1.1 87095 2i00A 406 1.58e-13 2euiA 153 1.72e-13 d.108.1.1 132387 2jdcA 146 1.74e-13 1xebA 150 1.95e-13 d.108.1.1 115219 2q4vA 170 2.27e-13 d.108.1.1 139878 1i1dA 161 2.49e-13 d.108.1.1 61526 2fiwA 172 2.92e-13 d.108.1.1 133539 1yvkA 163 3.12e-13 d.108.1.1 124101 2ft0A 235 3.21e-13 2pdoA 144 3.25e-13 2reeA 224 3.77e-13 2ozgA 396 4.25e-13 1kuxA 207 4.30e-13 d.108.1.1 73021 2bswA 146 5.52e-13 d.108.1.1 129127 1q2yA 140 6.49e-13 d.108.1.1 95655 1m4iA 181 8.97e-13 d.108.1.1 74457 1qstA 160 9.68e-13 d.108.1.1 40804 2c27A 315 1.26e-12 d.108.1.1 129659 1y9kA 157 1.32e-12 d.108.1.1 122779 1p0hA 318 1.32e-12 d.108.1.1 93866 1i12A 160 1.49e-12 d.108.1.1 61515 2fl4A 149 1.55e-12 d.108.1.1 133706 1n71A 180 2.12e-12 d.108.1.1 85370 2ganA 190 3.39e-12 d.108.1.1 134889 1yx0A 159 3.50e-12 d.108.1.1 124168 2q0yA 153 5.69e-12 1y7rA 133 1.11e-11 d.108.1.1 122716 1vkcA 158 3.64e-11 d.108.1.1 113663 2atrA 138 4.33e-11 d.108.1.1 127305 2ozhA 142 1.43e-10 1bo4A 168 1.21e-09 d.108.1.1 40798 2g0bA 198 2.99e-09 2g3aA 152 4.76e-09 d.108.1.1 134557 1y9wA 140 8.63e-09 d.108.1.1 122783 2r98A 456 6.07e-08 1ro5A 201 8.87e-07 d.108.1.3 105023 1kzfA 230 4.40e-05 d.108.1.3 73354 1ne9A 335 0.000126 d.108.1.4,d.108.1.4 91839,91840 2aj6A 159 0.000514 d.108.1.1 126841 2q04A 211 0.000600 1iicA 422 0.002391 d.108.1.2,d.108.1.2 62422,62423 1yleA 342 0.003316 d.108.1.8 123647 1lrzA 426 0.2366 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2pq8A 278 0.3542 1bob 320 0.4443 1xmtA 103 0.5821 d.108.1.1 115561 1fy7A 278 0.6227 d.108.1.1 40817 2givA 295 1.121 d.108.1.1 135253 2p0wA 324 3.532 2hqyA 305 5.419 1bobA 320 6.373 d.108.1.1 40816 1nmsA 249 11.18 c.17.1.1 85879 1lzlA 323 16.31 c.69.1.2 78306 2r85A 334 17.50 1wkqA 164 21.61 c.97.1.2 109393 2nvgA 141 28.08 3nul 130 33.60 3c8yA 574 34.31 1acfA 125 36.24 d.110.1.1 40882 2eb4A 267 38.40 2r6oA 294 43.00 2b8eA 273 43.75 c.108.1.7,d.220.1.1 128068,128069 1npyA 271 44.24 c.2.1.7,c.58.1.5 85995,85996 2yvyA 278 45.82 1u4nA 310 46.79 c.69.1.2 113021 1gsaA 316 51.99 c.30.1.3,d.142.1.1 31718,41477 1p0zA 131 52.34 d.110.6.1 93882 1gsa 316 58.90 2v0uA 146 59.42 1z6nA 167 60.21 c.47.1.1 124530 1e9pA 151 60.68 b.1.8.1 22215 2dy0A 190 67.53 2q5wE 149 67.90 1q0eA 152 68.72 b.1.8.1 95504 1ys5A 164 70.96 f.4.1.3 123956 1svjA 156 77.78 d.220.1.1 106049 2f9iA 327 81.15 1ru8A 232 81.22 c.26.2.1 97849 1z9nA 177 83.90 1a0rB 340 86.77 b.69.4.1 27658 1dd9A 338 87.51 e.13.1.1 43254 1yfqA 342 89.19 b.69.4.2 116680