# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nslA 184 2.43e-14 d.108.1.1 86137 2fsrA 195 2.77e-14 d.108.1.1 134036 2z10A 194 4.16e-14 1yreA 197 4.49e-14 d.108.1.1 123919 2fckA 181 4.90e-14 d.108.1.1 133272 2oh1A 179 1.83e-13 2ge3A 170 3.86e-13 d.108.1.1 135044 1vhsA 175 4.18e-13 d.108.1.1 100698 1s7kA 182 5.90e-13 d.108.1.1 118878 1qsmA 152 6.13e-13 d.108.1.1 40808 2prbA 196 6.37e-13 2j8mA 172 6.55e-13 1yr0A 175 7.17e-13 d.108.1.1 123905 1yk3A 210 7.27e-13 d.108.1.1 123493 1yvoA 172 9.51e-13 d.108.1.1 124106 2ob0A 170 1.19e-12 2qmlA 198 1.31e-12 2i6cA 160 1.41e-12 d.108.1.1 137095 1tiqA 180 1.89e-12 d.108.1.1 107010 2b5gA 171 2.17e-12 d.108.1.1 127892 2fe7A 166 2.33e-12 d.108.1.1 133325 2cy2A 174 2.56e-12 d.108.1.1 131016 2r1iA 172 2.67e-12 2fiaA 162 2.72e-12 d.108.1.1 133514 2ae6A 166 3.09e-12 d.108.1.1 126600 1mk4A 157 3.87e-12 d.108.1.1 84979 2dxqA 150 5.08e-12 1s3zA 165 5.18e-12 d.108.1.1 105250 2euiA 153 5.66e-12 d.108.1.1 132387 2pc1A 201 6.01e-12 1u6mA 199 6.65e-12 d.108.1.1 113069 1on0A 158 6.82e-12 d.108.1.1 87095 2i79A 172 6.95e-12 2cntA 160 9.14e-12 1sqhA 312 9.93e-12 d.108.1.5 98966 1gheA 177 1.13e-11 d.108.1.1 76222 1z4eA 153 1.13e-11 d.108.1.1 124431 2r7hA 177 1.53e-11 2jdcA 146 1.67e-11 2q4vA 170 1.86e-11 d.108.1.1 139878 2o28A 184 1.99e-11 1xebA 150 2.22e-11 d.108.1.1 115219 1cjwA 166 2.64e-11 d.108.1.1 40818 1wwzA 159 2.77e-11 d.108.1.1 121380 2reeA 224 2.86e-11 2pdoA 144 2.86e-11 1l0cA 207 3.18e-11 d.108.1.1 73393 2hv2A 400 3.33e-11 1i12A 160 3.84e-11 d.108.1.1 61515 1z4rA 168 3.88e-11 d.108.1.1 124444 1i1dA 161 4.04e-11 d.108.1.1 61526 2ganA 190 4.96e-11 d.108.1.1 134889 1yvkA 163 4.99e-11 d.108.1.1 124101 2q0yA 153 5.02e-11 3blnA 143 5.21e-11 2qecA 204 5.46e-11 2bswA 146 6.16e-11 d.108.1.1 129127 2i00A 406 6.31e-11 2ft0A 235 6.34e-11 1yghA 164 6.97e-11 d.108.1.1 40802 3c26A 266 9.14e-11 1kuxA 207 9.25e-11 d.108.1.1 73021 1q2yA 140 1.02e-10 d.108.1.1 95655 2ozgA 396 1.74e-10 2fl4A 149 1.77e-10 d.108.1.1 133706 1m4iA 181 2.02e-10 d.108.1.1 74457 2fiwA 172 2.38e-10 d.108.1.1 133539 1y7rA 133 2.60e-10 d.108.1.1 122716 1qstA 160 2.97e-10 d.108.1.1 40804 1y9kA 157 3.15e-10 d.108.1.1 122779 2c27A 315 3.57e-10 d.108.1.1 129659 1vkcA 158 4.45e-10 d.108.1.1 113663 1n71A 180 5.16e-10 d.108.1.1 85370 1yx0A 159 7.16e-10 d.108.1.1 124168 2atrA 138 8.11e-10 d.108.1.1 127305 1p0hA 318 1.21e-09 d.108.1.1 93866 1bo4A 168 1.22e-09 d.108.1.1 40798 2ozhA 142 1.98e-09 1y9wA 140 4.37e-08 d.108.1.1 122783 2g3aA 152 1.16e-07 d.108.1.1 134557 2g0bA 198 3.65e-07 2r98A 456 3.61e-06 1ro5A 201 6.02e-06 d.108.1.3 105023 1kzfA 230 0.000141 d.108.1.3 73354 2aj6A 159 0.000632 d.108.1.1 126841 1ne9A 335 0.001136 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.002495 d.108.1.8 123647 2q04A 211 0.002558 1iicA 422 0.01225 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.2029 1bobA 320 0.2650 d.108.1.1 40816 2givA 295 0.3190 d.108.1.1 135253 2pq8A 278 0.3741 1xmtA 103 0.7419 d.108.1.1 115561 1fy7A 278 0.8366 d.108.1.1 40817 2p0wA 324 1.330 1lrzA 426 4.557 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2hqyA 305 9.846 1r6xA 395 13.40 b.122.1.3,c.26.1.5 97167,97168 1svjA 156 14.29 d.220.1.1 106049 1dd9A 338 16.57 e.13.1.1 43254 2b8eA 273 23.52 c.108.1.7,d.220.1.1 128068,128069 2r85A 334 28.58 1nmsA 249 29.79 c.17.1.1 85879 2au3A 407 30.20 2c42A 1231 35.50 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1acfA 125 39.21 d.110.1.1 40882 1npyA 271 39.41 c.2.1.7,c.58.1.5 85995,85996 1yloA 348 41.63 b.49.3.1,c.56.5.4 123659,123660 2yvdA 431 42.18 1e9pA 151 42.30 b.1.8.1 22215 2g84A 197 42.66 c.97.1.2 134766 1nvtA 287 44.25 c.2.1.7,c.58.1.5 86270,86271 1nuiA 255 44.25 e.13.1.2,g.41.3.2 86194,86195 1mfmA 153 44.56 b.1.8.1 22246 1gsaA 316 44.69 c.30.1.3,d.142.1.1 31718,41477 1p0zA 131 45.83 d.110.6.1 93882 1q0eA 152 46.45 b.1.8.1 95504 1f1gA 154 47.73 b.1.8.1 76153 1ko3A 230 47.79 d.157.1.1 90974 2b25A 336 47.98 c.66.1.13 127699 3nul 130 48.52 2i8aA 252 48.96 2eb4A 267 51.67 2cvbA 188 51.85 c.47.1.10 130859 1to4A 156 53.44 b.1.8.1 107162 1u4nA 310 56.81 c.69.1.2 113021 3c8cA 240 59.22 1y791 680 62.58 1wkqA 164 63.84 c.97.1.2 109393 1w2xA 758 70.02 c.14.1.4,c.14.1.4 109134,109135 1sv6A 269 70.15 d.177.1.1 106043 2qkpA 151 71.15 2gj3A 120 73.63 1nwwA 149 76.50 d.17.4.8 86306 2d5cA 263 76.51 1gsa 316 76.70 2dnjA 260 78.17 d.151.1.1 41790 2aqqA 164 79.45 1bywA 110 80.81 d.110.3.6 40912 2cxaA 256 81.35 d.108.1.6 130993 1yfqA 342 82.04 b.69.4.2 116680 1vr9A 213 82.48 d.37.1.1,d.37.1.1 120446,120447 1lzlA 323 82.97 c.69.1.2 78306 2uubK 129 83.07 c.55.4.1 139942 1ys5A 164 83.36 f.4.1.3 123956 1a9xA 1058 83.70 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2eggA 297 84.15 1xsoA 150 85.88 b.1.8.1 22273 1a0rB 340 89.94 b.69.4.1 27658