# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fckA 181 4.70e-11 d.108.1.1 133272 2z10A 194 5.23e-11 1nslA 184 9.66e-11 d.108.1.1 86137 1yreA 197 1.02e-10 d.108.1.1 123919 1s3zA 165 1.55e-10 d.108.1.1 105250 2ob0A 170 1.87e-10 2pc1A 201 2.38e-10 1s7kA 182 2.39e-10 d.108.1.1 118878 1z4eA 153 2.76e-10 d.108.1.1 124431 2fe7A 166 2.84e-10 d.108.1.1 133325 2pdoA 144 3.25e-10 2fsrA 195 3.45e-10 d.108.1.1 134036 2ge3A 170 3.62e-10 d.108.1.1 135044 1yr0A 175 4.10e-10 d.108.1.1 123905 2ae6A 166 4.39e-10 d.108.1.1 126600 1tiqA 180 4.47e-10 d.108.1.1 107010 2j8mA 172 5.88e-10 1vhsA 175 6.11e-10 d.108.1.1 100698 2prbA 196 6.29e-10 1yvoA 172 7.09e-10 d.108.1.1 124106 2cy2A 174 9.57e-10 d.108.1.1 131016 2cntA 160 1.03e-09 1yk3A 210 1.10e-09 d.108.1.1 123493 2dxqA 150 1.20e-09 1qsmA 152 1.47e-09 d.108.1.1 40808 1i1dA 161 1.78e-09 d.108.1.1 61526 2r7hA 177 2.01e-09 2i79A 172 2.09e-09 1i12A 160 2.11e-09 d.108.1.1 61515 1mk4A 157 2.19e-09 d.108.1.1 84979 2b5gA 171 2.67e-09 d.108.1.1 127892 1l0cA 207 2.79e-09 d.108.1.1 73393 1gheA 177 3.75e-09 d.108.1.1 76222 1cjwA 166 4.00e-09 d.108.1.1 40818 2q4vA 170 4.28e-09 d.108.1.1 139878 2qecA 204 5.36e-09 2oh1A 179 5.73e-09 2euiA 153 6.40e-09 d.108.1.1 132387 2i6cA 160 8.24e-09 d.108.1.1 137095 1kuxA 207 9.00e-09 d.108.1.1 73021 2r1iA 172 9.20e-09 2o28A 184 9.75e-09 3blnA 143 1.21e-08 1on0A 158 1.44e-08 d.108.1.1 87095 2fiaA 162 1.49e-08 d.108.1.1 133514 1u6mA 199 1.64e-08 d.108.1.1 113069 2fiwA 172 2.30e-08 d.108.1.1 133539 2qmlA 198 2.45e-08 1vkcA 158 2.46e-08 d.108.1.1 113663 2c27A 315 3.44e-08 d.108.1.1 129659 2ft0A 235 4.21e-08 2bswA 146 4.61e-08 d.108.1.1 129127 1p0hA 318 4.77e-08 d.108.1.1 93866 1sqhA 312 4.99e-08 d.108.1.5 98966 2hv2A 400 5.03e-08 2reeA 224 5.41e-08 2q0yA 153 1.54e-07 2fl4A 149 2.00e-07 d.108.1.1 133706 2ozgA 396 2.42e-07 2jdcA 146 2.67e-07 3c26A 266 2.70e-07 1wwzA 159 3.39e-07 d.108.1.1 121380 2i00A 406 4.80e-07 1xebA 150 5.54e-07 d.108.1.1 115219 1y9kA 157 9.65e-07 d.108.1.1 122779 1yghA 164 9.66e-07 d.108.1.1 40802 1y7rA 133 1.34e-06 d.108.1.1 122716 1m4iA 181 1.89e-06 d.108.1.1 74457 1q2yA 140 2.95e-06 d.108.1.1 95655 1z4rA 168 3.05e-06 d.108.1.1 124444 1n71A 180 3.82e-06 d.108.1.1 85370 1yvkA 163 3.82e-06 d.108.1.1 124101 2ganA 190 4.95e-06 d.108.1.1 134889 1y9wA 140 6.15e-06 d.108.1.1 122783 1qstA 160 6.36e-06 d.108.1.1 40804 1yx0A 159 6.50e-06 d.108.1.1 124168 2atrA 138 7.65e-06 d.108.1.1 127305 1bo4A 168 8.64e-06 d.108.1.1 40798 2g3aA 152 2.01e-05 d.108.1.1 134557 2ozhA 142 2.30e-05 2r98A 456 5.33e-05 2g0bA 198 0.000185 1ro5A 201 0.000228 d.108.1.3 105023 1yleA 342 0.000412 d.108.1.8 123647 1kzfA 230 0.003060 d.108.1.3 73354 2q04A 211 0.007989 2aj6A 159 0.01758 d.108.1.1 126841 1lrzA 426 0.02968 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d4pA 141 0.07317 1iicA 422 0.1393 d.108.1.2,d.108.1.2 62422,62423 1ne9A 335 0.3356 d.108.1.4,d.108.1.4 91839,91840 1bobA 320 0.3891 d.108.1.1 40816 1bob 320 0.8486 2givA 295 1.855 d.108.1.1 135253 2hqyA 305 2.095 1xmtA 103 3.828 d.108.1.1 115561 1y2qA 143 5.814 2hvwA 184 6.855 1fy7A 278 7.318 d.108.1.1 40817 2hl0A 143 9.074 2arhA 203 9.643 d.108.1.9 127197 2pq8A 278 10.16 1f1xA 322 10.72 d.32.1.3,d.32.1.3 83208,83209 1f89A 291 10.87 d.160.1.1 64988 2b8eA 273 11.19 c.108.1.7,d.220.1.1 128068,128069 2uubK 129 11.91 c.55.4.1 139942 2qqzA 126 12.52 2yvyA 278 12.97 2pw9A 268 13.31 2db1A 118 13.88 1lkdA 297 14.98 d.32.1.3,d.32.1.3 78059,78060 2r85A 334 16.36 1f1uA 323 16.79 d.32.1.3,d.32.1.3 83200,83201 2p0wA 324 17.55 1kw3B 292 18.80 d.32.1.3,d.32.1.3 77549,77550 1svjA 156 20.29 d.220.1.1 106049 2uxyA 341 22.82 1fc6A 388 24.22 b.36.1.3,c.14.1.2 64738,64739 1vjfA 180 26.10 d.116.1.1 100809 2au3A 407 28.54 2qy6A 257 28.89 1r6xA 395 29.75 b.122.1.3,c.26.1.5 97167,97168 1vkiA 181 31.35 d.116.1.1 108664 1y791 680 31.54 1u02A 239 31.62 c.108.1.15 107538 2vqeK 129 31.95 1wdvA 152 34.13 d.116.1.1 114539 2hglA 136 34.17 3nul 130 34.26 2ouxA 286 34.78 1fxlA 167 36.31 d.58.7.1,d.58.7.1 39183,39184 2gq0A 303 36.44 2pn0A 141 37.44 1nuiA 255 37.45 e.13.1.2,g.41.3.2 86194,86195 1mmlA 265 38.76 e.8.1.2 43015 2ehzA 302 39.36 1p4kA 295 40.18 d.153.1.5 87772 1zzmA 259 40.69 c.1.9.12 125911 1hwxA 501 40.72 c.2.1.7,c.58.1.1 30250,33898 1fjgK 129 40.92 c.55.4.1 33733 1vq2A 193 42.31 c.97.1.2 114004 1z2nX 324 44.12 3b7nA 320 44.12 1zh5A 195 45.28 a.4.5.46,d.58.7.1 125073,125074 3b8mA 280 47.34 1zfjA 491 47.81 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2r7dA 469 48.28 1mml 265 50.11 1nytA 271 50.34 c.2.1.7,c.58.1.5 86417,86418 2qfjA 216 50.81 3c8wA 255 51.36 2nycA 144 51.52 d.37.1.1 138812 1l3kA 196 51.75 d.58.7.1,d.58.7.1 73539,73540 2vooA 193 54.75 2z5lA 511 54.76 2f2aB 483 55.00 a.182.1.2,d.128.1.5 132802,132803 2r01A 210 55.57 1acfA 125 57.53 d.110.1.1 40882 2arfA 165 59.36 1p35A 299 60.95 b.28.1.1 23925 2bl9A 238 64.36 2qh8A 302 64.54 1acf 125 65.63 1aua 296 66.89 1a8l 226 68.38 1zu0A 529 68.56 3biyA 380 69.74 1a79A 171 69.97 c.52.2.1,d.75.1.1 33340,39739 1y6zA 263 71.17 2hhcA 330 71.79 1js8A 394 72.76 a.86.1.1,b.112.1.1 67219,67220 1xg4A 295 73.71 2nooA 502 74.28 1x7dA 350 74.56 c.2.1.13 114927 1j31A 262 75.23 d.160.1.2 90808 1omoA 322 77.67 c.2.1.13 104017 1a9xA 1058 78.80 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1s2wA 295 81.05 c.1.12.7 98407 1l3lA 234 81.31 a.4.6.2,d.110.5.1 73541,73542 1yqyA 523 83.26 d.92.1.14,d.166.1.1 123903,123904 1zlqA 502 83.55 c.94.1.1 125253 1zkpA 268 83.93 d.157.1.9 125205 1xzpB 150 84.09 d.250.1.2 116257 2qlcA 126 85.93 1k47A 337 88.85 d.14.1.5,d.58.26.4 72040,72041 1wwhA 119 89.56 d.58.7.1 121358