# List of top-scoring protein chains for T0417.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yr0A 175 4.02e-18 d.108.1.1 123905 2j8mA 172 6.29e-18 1yvoA 172 6.99e-18 d.108.1.1 124106 2fe7A 166 4.12e-16 d.108.1.1 133325 2cntA 160 2.19e-15 1vhsA 175 2.28e-15 d.108.1.1 100698 2q4vA 170 2.40e-14 d.108.1.1 139878 2jevA 174 5.94e-14 d.108.1.1 138287 2b5gB 171 6.47e-14 d.108.1.1 127893 2g3tA 179 7.49e-14 d.108.1.1 134572 2b5gA 171 7.85e-14 d.108.1.1 127892 2b3uA 171 8.49e-14 d.108.1.1 127797 2fxfA 170 8.98e-14 d.108.1.1 134308 2ae6A 166 1.89e-13 d.108.1.1 126600 2pdoA 144 4.03e-13 2ge3A 170 1.02e-12 d.108.1.1 135044 2i79A 172 1.87e-12 2cy2A 174 1.82e-11 d.108.1.1 131016 2ob0A 170 4.66e-11 1z4eA 153 5.80e-11 d.108.1.1 124431 1tiqA 180 1.21e-10 d.108.1.1 107010 2dxqA 150 2.12e-10 1wwzA 159 3.16e-10 d.108.1.1 121380 1mk4A 157 7.47e-10 d.108.1.1 84979 1u6mA 199 1.73e-09 d.108.1.1 113069 1s3zA 165 1.75e-09 d.108.1.1 105250 2euiA 153 4.79e-09 d.108.1.1 132387 1qsmA 152 5.60e-09 d.108.1.1 40808 1qsoA 149 6.82e-09 d.108.1.1 40812 1ufhA 180 2.58e-08 d.108.1.1 88485 1vkcA 158 4.89e-08 d.108.1.1 113663 1y9kA 157 6.55e-08 d.108.1.1 122779 1on0A 158 6.91e-08 d.108.1.1 87095 2prbA 196 1.02e-07 2i6cA 160 1.13e-07 d.108.1.1 137095 1i1dA 161 1.57e-07 d.108.1.1 61526 1i12A 160 1.69e-07 d.108.1.1 61515 1i21A 159 1.89e-07 d.108.1.1 61549 1bo4A 168 2.36e-07 d.108.1.1 40798 2pr8A 196 4.70e-07 2o28A 184 4.84e-07 2qecA 204 9.71e-07 2fl4A 149 1.16e-06 d.108.1.1 133706 2fiaA 162 1.95e-06 d.108.1.1 133514 2atrA 138 2.16e-06 d.108.1.1 127305 2r1iA 172 2.63e-06 2r7hA 177 3.17e-06 1gheA 177 3.56e-06 d.108.1.1 76222 2q0yA 153 3.98e-06 2aj6A 159 4.59e-06 d.108.1.1 126841 1p0hA 318 4.67e-06 d.108.1.1 93866 2c27A 315 4.67e-06 d.108.1.1 129659 2fiwA 172 4.89e-06 d.108.1.1 133539 1yx0A 159 5.59e-06 d.108.1.1 124168 1y9wA 140 7.85e-06 d.108.1.1 122783 2r98A 456 8.77e-06 3blnA 143 9.03e-06 1nslA 184 9.50e-06 d.108.1.1 86137 3c26A 266 2.00e-05 1cjwA 166 2.30e-05 d.108.1.1 40818 1b6bA 174 2.33e-05 d.108.1.1 40819 1kuxA 207 2.50e-05 d.108.1.1 73021 1ib1E 200 2.51e-05 d.108.1.1 62137 2a4nA 182 2.53e-05 d.108.1.1 126159 1b87A 181 2.66e-05 d.108.1.1 40797 2g3aA 152 2.86e-05 d.108.1.1 134557 1n71A 180 2.90e-05 d.108.1.1 85370 1l0cA 207 5.28e-05 d.108.1.1 73393 2ozhA 142 7.11e-05 1yvkA 163 7.25e-05 d.108.1.1 124101 2q7bA 181 7.82e-05 1q2yA 140 0.000109 d.108.1.1 95655 1s7fA 199 0.000117 d.108.1.1 118877 2ganA 190 0.000119 d.108.1.1 134889 2fckA 181 0.000149 d.108.1.1 133272 5gcnA 166 0.000152 d.108.1.1 40807 1s7kA 182 0.000155 d.108.1.1 118878 1m1dA 163 0.000156 d.108.1.1 78397 1qstA 160 0.000157 d.108.1.1 40804 1qsrA 162 0.000158 d.108.1.1 40805 1z9uA 179 0.000180 d.108.1.1 124770 2reeA 224 0.000184 2oh1A 179 0.000371 1cm0A 168 0.000788 d.108.1.1 40800 2pc1A 201 0.001070 2ozgA 396 0.001293 1z4rA 168 0.001329 d.108.1.1 124444 1sqhA 312 0.001495 d.108.1.5 98966 2jdcA 146 0.001889 1y7rA 133 0.002668 d.108.1.1 122716 2ft0A 235 0.003396 1yreA 197 0.005833 d.108.1.1 123919 2pr1A 163 0.01308 1xebA 150 0.01477 d.108.1.1 115219 1m4iA 181 0.03321 d.108.1.1 74457 1yghA 164 0.04150 d.108.1.1 40802 2fsrA 195 0.05406 d.108.1.1 134036 2qmlA 198 0.06501 1r57A 102 0.1378 d.108.1.1 97080 2q04A 211 0.2927 2rc4A 287 0.3295 1iykA 392 0.3361 d.108.1.2,d.108.1.2 76958,76959 1rxtA 496 0.3566 d.108.1.2,d.108.1.2 118793,118794 2ozuA 284 0.3861 d.108.1.1 139451 1mj9A 278 0.4631 d.108.1.1 79190 1mjbA 278 0.8141 d.108.1.1 79192 1mjaA 278 0.8326 d.108.1.1 79191 1fy7A 278 0.8350 d.108.1.1 40817 1bobA 320 1.050 d.108.1.1 40816 2z10A 194 1.709 2d4oA 141 2.126 2givA 295 2.314 d.108.1.1 135253 2hv2A 400 2.355 2pq8A 278 2.364 2d4pA 141 2.577 2a9gA 418 2.797 d.126.1.4 126435 1iicA 422 2.807 d.108.1.2,d.108.1.2 62422,62423 2p6eA 455 2.950 2ou2A 280 3.590 2abrA 418 3.593 d.126.1.4 126530 2aafA 418 3.844 d.126.1.4 126471 2i00A 406 3.927 2aciA 418 4.166 d.126.1.4 126551 2z0zA 194 4.308 1rxxA 421 4.383 d.126.1.4 98061 2d59A 144 16.37 c.2.1.8 131266 2p0wA 324 27.55 1i4oA 280 38.85 c.17.1.1 61721 1f1jA 305 41.91 c.17.1.1 59596 1tuoA 464 43.91 1gqfA 265 46.51 c.17.1.1 65470 1shjA 262 47.49 c.17.1.1 105554 1k86A 253 48.13 c.17.1.1 68288 1yleA 342 48.63 d.108.1.8 123647 1kmcA 303 49.82 c.17.1.1 68690 1svjA 156 53.00 d.220.1.1 106049 1shlA 245 54.69 c.17.1.1 105556 1k88A 253 58.42 c.17.1.1 68290 2nt0A 497 60.12 b.71.1.2,c.1.8.3 138561,138562 2dbjA 124 60.68 2v3fA 505 63.03 1iagA 202 65.37 d.92.1.9 40319 1dtzA 689 67.75 c.94.1.2,c.94.1.2 59134,59135 1i8kA 107 68.16 b.1.1.1 71130 2atzA 180 71.84 d.264.1.3 127317 2qgyA 391 78.52 2ywvA 244 89.91