# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 9.31e-20 d.108.1.1 126600 2ob0A 170 2.38e-19 2cntA 160 2.68e-19 2j8mA 172 9.07e-19 1vhsA 175 9.31e-19 d.108.1.1 100698 1tiqA 180 1.33e-18 d.108.1.1 107010 2b5gA 171 1.87e-18 d.108.1.1 127892 1mk4A 157 2.41e-18 d.108.1.1 84979 1yr0A 175 2.43e-18 d.108.1.1 123905 2cy2A 174 2.97e-18 d.108.1.1 131016 2ge3A 170 3.02e-18 d.108.1.1 135044 1kuxA 207 3.63e-18 d.108.1.1 73021 2fiaA 162 5.02e-18 d.108.1.1 133514 1yvoA 172 5.55e-18 d.108.1.1 124106 2pdoA 144 6.95e-18 1l0cA 207 8.12e-18 d.108.1.1 73393 3blnA 143 9.87e-18 2q4vA 170 1.02e-17 d.108.1.1 139878 2i6cA 160 1.07e-17 d.108.1.1 137095 1s3zA 165 1.21e-17 d.108.1.1 105250 2fe7A 166 1.67e-17 d.108.1.1 133325 2r7hA 177 1.80e-17 2oh1A 179 2.11e-17 1yreA 197 2.18e-17 d.108.1.1 123919 2reeA 224 2.30e-17 1gheA 177 2.33e-17 d.108.1.1 76222 1nslA 184 2.51e-17 d.108.1.1 86137 2dxqA 150 3.11e-17 2euiA 153 3.22e-17 d.108.1.1 132387 2fl4A 149 5.20e-17 d.108.1.1 133706 3c26A 266 5.35e-17 1z4eA 153 6.42e-17 d.108.1.1 124431 1y9kA 157 7.48e-17 d.108.1.1 122779 1z4rA 168 1.52e-16 d.108.1.1 124444 1s7kA 182 1.77e-16 d.108.1.1 118878 1qsmA 152 2.34e-16 d.108.1.1 40808 1u6mA 199 2.57e-16 d.108.1.1 113069 1qsoA 149 2.59e-16 d.108.1.1 40812 2i79A 172 2.73e-16 1on0A 158 2.87e-16 d.108.1.1 87095 2ozgA 396 3.11e-16 1xebA 150 3.73e-16 d.108.1.1 115219 1b87A 181 4.00e-16 d.108.1.1 40797 1wwzA 159 4.30e-16 d.108.1.1 121380 2r1iA 172 5.19e-16 2o28A 184 5.39e-16 1q2yA 140 6.60e-16 d.108.1.1 95655 1yghA 164 6.72e-16 d.108.1.1 40802 1sqhA 312 7.71e-16 d.108.1.5 98966 1qstA 160 7.75e-16 d.108.1.1 40804 1cjwA 166 9.30e-16 d.108.1.1 40818 1yvkA 163 1.14e-15 d.108.1.1 124101 2hv2A 400 1.55e-15 2bswA 146 1.76e-15 d.108.1.1 129127 2qecA 204 1.88e-15 2a4nA 182 1.93e-15 d.108.1.1 126159 2fiwA 172 2.09e-15 d.108.1.1 133539 2pc1A 201 2.78e-15 1y7rA 133 2.90e-15 d.108.1.1 122716 1yx0A 159 3.30e-15 d.108.1.1 124168 2fckA 181 4.32e-15 d.108.1.1 133272 1i1dA 161 4.40e-15 d.108.1.1 61526 2i00A 406 4.69e-15 2ft0A 235 5.86e-15 2c27A 315 5.87e-15 d.108.1.1 129659 1yk3A 210 6.76e-15 d.108.1.1 123493 1bo4A 168 6.89e-15 d.108.1.1 40798 2q0yA 153 9.17e-15 2atrA 138 9.70e-15 d.108.1.1 127305 1n71A 180 1.33e-14 d.108.1.1 85370 1vkcA 158 2.41e-14 d.108.1.1 113663 2jdcA 146 2.42e-14 1y9wA 140 4.84e-14 d.108.1.1 122783 1m4iA 181 5.31e-14 d.108.1.1 74457 1i12A 160 7.63e-14 d.108.1.1 61515 2g3aA 152 1.11e-13 d.108.1.1 134557 2fsrA 195 2.77e-13 d.108.1.1 134036 2ganA 190 3.44e-13 d.108.1.1 134889 1p0hA 318 4.10e-13 d.108.1.1 93866 2ozhA 142 4.88e-13 2prbA 196 1.40e-11 2qmlA 198 4.29e-11 2z10A 194 2.39e-10 2aj6A 159 5.64e-06 d.108.1.1 126841 1ro5A 201 1.02e-05 d.108.1.3 105023 2g0bA 198 9.06e-05 2r98A 456 0.000259 1ne9A 335 0.004364 d.108.1.4,d.108.1.4 91839,91840 1iicA 422 0.005575 d.108.1.2,d.108.1.2 62422,62423 2q04A 211 0.005755 2pq8A 278 0.02966 2givA 295 0.04490 d.108.1.1 135253 1xmtA 103 0.04530 d.108.1.1 115561 1bob 320 0.1178 1yleA 342 0.1190 d.108.1.8 123647 1kzfA 230 0.1451 d.108.1.3 73354 2p0wA 324 0.2280 1bobA 320 0.2596 d.108.1.1 40816 1fy7A 278 0.3407 d.108.1.1 40817 1svjA 156 0.8138 d.220.1.1 106049 1lrzA 426 1.817 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d59A 144 3.530 c.2.1.8 131266 2hqyA 305 7.797 2ehzA 302 10.11 2v0uA 146 17.80 1pvmA 184 20.31 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2gj3A 120 22.07 2pdrA 149 23.42 2uubK 129 24.49 c.55.4.1 139942 1kllA 130 26.42 d.32.1.2 72720 1han 297 32.77 1zoyA 622 32.87 1qipA 183 37.46 d.32.1.1 38470 1f1xA 322 37.55 d.32.1.3,d.32.1.3 83208,83209 1f1uA 323 38.92 d.32.1.3,d.32.1.3 83200,83201 1ecsA 126 43.03 d.32.1.2 59407 1c0pA 363 43.24 c.4.1.2,d.16.1.3 30647,37934 2c2iA 151 46.68 d.38.1.4 129670 2ouxA 286 47.51 1z15A 344 48.30 2cxaA 256 51.66 d.108.1.6 130993 2e5vA 472 51.86 2a8eA 220 53.18 d.296.1.1 126397 2qqzA 126 53.90 2pd8A 149 56.21 2yzqA 282 57.40 3ce9A 354 61.30 1xtaA 221 61.63 1n9bA 265 65.88 e.3.1.1 85463 1p0zA 131 66.88 d.110.6.1 93882 2fy6A 143 67.06 c.47.1.10 134344 1sv6A 269 67.63 d.177.1.1 106043 1pn2A 280 71.23 d.38.1.4,d.38.1.4 94930,94931 1o50A 157 71.76 d.37.1.1,d.37.1.1 92478,92479 1n9lA 109 76.70 d.110.3.6 85468 1oniA 137 77.02 d.79.1.1 87144 3c8cA 240 77.83 2pr5A 132 81.10 2hmaA 376 85.67 2i7rA 118 88.61 d.32.1.2 137102 2qh0A 138 89.16