# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 1.24e-19 d.108.1.1 126600 2ob0A 170 2.07e-19 2cntA 160 4.24e-19 1tiqA 180 1.40e-18 d.108.1.1 107010 2j8mA 172 1.71e-18 2b5gA 171 1.83e-18 d.108.1.1 127892 1vhsA 175 1.95e-18 d.108.1.1 100698 1yr0A 175 2.48e-18 d.108.1.1 123905 2cy2A 174 2.53e-18 d.108.1.1 131016 2ge3A 170 4.41e-18 d.108.1.1 135044 2pdoA 144 4.49e-18 2fiaA 162 4.56e-18 d.108.1.1 133514 1kuxA 207 4.69e-18 d.108.1.1 73021 1mk4A 157 4.72e-18 d.108.1.1 84979 1yvoA 172 7.26e-18 d.108.1.1 124106 1s3zA 165 9.31e-18 d.108.1.1 105250 2fe7A 166 1.14e-17 d.108.1.1 133325 2q4vA 170 1.15e-17 d.108.1.1 139878 2i6cA 160 1.18e-17 d.108.1.1 137095 1l0cA 207 1.21e-17 d.108.1.1 73393 3blnA 143 1.32e-17 1gheA 177 1.54e-17 d.108.1.1 76222 2r7hA 177 1.64e-17 2euiA 153 1.95e-17 d.108.1.1 132387 1yreA 197 1.97e-17 d.108.1.1 123919 2reeA 224 2.07e-17 2dxqA 150 2.20e-17 1nslA 184 2.43e-17 d.108.1.1 86137 2oh1A 179 2.70e-17 3c26A 266 4.11e-17 2fl4A 149 5.73e-17 d.108.1.1 133706 1z4eA 153 6.52e-17 d.108.1.1 124431 1y9kA 157 8.86e-17 d.108.1.1 122779 1z4rA 168 1.02e-16 d.108.1.1 124444 1qsmA 152 1.66e-16 d.108.1.1 40808 1qsoA 149 2.01e-16 d.108.1.1 40812 1u6mA 199 2.34e-16 d.108.1.1 113069 1on0A 158 2.47e-16 d.108.1.1 87095 2o28A 184 2.82e-16 1s7kA 182 2.82e-16 d.108.1.1 118878 1wwzA 159 3.07e-16 d.108.1.1 121380 2i79A 172 3.34e-16 2r1iA 172 3.40e-16 1b87A 181 4.98e-16 d.108.1.1 40797 2ozgA 396 6.11e-16 1yvkA 163 6.21e-16 d.108.1.1 124101 1cjwA 166 7.21e-16 d.108.1.1 40818 1yghA 164 8.73e-16 d.108.1.1 40802 1xebA 150 9.00e-16 d.108.1.1 115219 1q2yA 140 1.17e-15 d.108.1.1 95655 1yx0A 159 1.33e-15 d.108.1.1 124168 2qecA 204 1.37e-15 1y7rA 133 1.56e-15 d.108.1.1 122716 1qstA 160 1.61e-15 d.108.1.1 40804 1sqhA 312 1.90e-15 d.108.1.5 98966 2a4nA 182 2.15e-15 d.108.1.1 126159 2bswA 146 2.70e-15 d.108.1.1 129127 2fiwA 172 2.73e-15 d.108.1.1 133539 2pc1A 201 2.85e-15 2hv2A 400 2.90e-15 2c27A 315 3.71e-15 d.108.1.1 129659 2fckA 181 4.74e-15 d.108.1.1 133272 2atrA 138 5.36e-15 d.108.1.1 127305 1i1dA 161 6.02e-15 d.108.1.1 61526 1bo4A 168 6.94e-15 d.108.1.1 40798 2i00A 406 7.81e-15 1yk3A 210 8.38e-15 d.108.1.1 123493 2ft0A 235 9.25e-15 2q0yA 153 1.17e-14 1vkcA 158 1.34e-14 d.108.1.1 113663 1y9wA 140 2.38e-14 d.108.1.1 122783 1n71A 180 2.92e-14 d.108.1.1 85370 2jdcA 146 5.02e-14 2g3aA 152 5.53e-14 d.108.1.1 134557 1m4iA 181 5.54e-14 d.108.1.1 74457 1i12A 160 1.00e-13 d.108.1.1 61515 2ganA 190 3.43e-13 d.108.1.1 134889 1p0hA 318 4.33e-13 d.108.1.1 93866 2ozhA 142 4.47e-13 2fsrA 195 6.89e-13 d.108.1.1 134036 2prbA 196 1.78e-11 2qmlA 198 4.21e-11 2z10A 194 1.46e-10 2aj6A 159 5.56e-06 d.108.1.1 126841 1ro5A 201 1.50e-05 d.108.1.3 105023 2g0bA 198 5.81e-05 2r98A 456 0.000286 1ne9A 335 0.002117 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.005229 1iicA 422 0.005348 d.108.1.2,d.108.1.2 62422,62423 1yleA 342 0.04745 d.108.1.8 123647 1xmtA 103 0.04973 d.108.1.1 115561 2pq8A 278 0.07685 1bob 320 0.09812 1kzfA 230 0.1132 d.108.1.3 73354 2givA 295 0.1346 d.108.1.1 135253 1bobA 320 0.1386 d.108.1.1 40816 2p0wA 324 0.1577 1svjA 156 0.7607 d.220.1.1 106049 1fy7A 278 1.184 d.108.1.1 40817 1lrzA 426 1.626 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2hqyA 305 4.256 2d59A 144 13.72 c.2.1.8 131266 2v0uA 146 14.50 2gj3A 120 18.08 2pdrA 149 20.28 1kllA 130 21.39 d.32.1.2 72720 2uubK 129 23.23 c.55.4.1 139942 2ehzA 302 23.51 2pd8A 149 28.26 1ecsA 126 30.64 d.32.1.2 59407 1qipA 183 31.06 d.32.1.1 38470 1pvmA 184 31.43 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2rgqA 144 31.65 1o50A 157 38.34 d.37.1.1,d.37.1.1 92478,92479 1iznB 277 39.45 e.43.1.2 83848 2yzqA 282 40.25 1n9bA 265 41.32 e.3.1.1 85463 1qtoA 122 41.52 d.32.1.2 38494 1p0zA 131 42.64 d.110.6.1 93882 1xtaA 221 43.61 2a8eA 220 45.31 d.296.1.1 126397 3ce9A 354 50.92 1ss4A 153 51.01 d.32.1.6 105976 2cxaA 256 53.39 d.108.1.6 130993 2c2iA 151 53.74 d.38.1.4 129670 3b47A 134 56.16 1z15A 344 60.01 1f1xA 322 60.39 d.32.1.3,d.32.1.3 83208,83209 1fa8A 135 63.04 d.32.1.1 38486 2arfA 165 63.23 3c8cA 240 63.43 2qfjA 216 63.88 2mprA 421 64.63 f.4.3.2 43788 2q48A 166 68.35 d.32.1.9 139829 1han 297 75.74 1m5q1 130 76.45 1kw3B 292 78.81 d.32.1.3,d.32.1.3 77549,77550 1ve0A 134 79.66 1pn2A 280 81.04 d.38.1.4,d.38.1.4 94930,94931 1sv6A 269 81.35 d.177.1.1 106043 1n9lA 109 82.79 d.110.3.6 85468 3brkX 420 85.46 2aqpA 164 85.82 1qahA 136 86.64 d.79.1.1 96338 1oalA 151 87.24 b.1.8.1 86739 2vqeK 129 88.99 1esoA 154 89.89 b.1.8.1 22293 2pjkA 178 89.91