# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 3.66e-20 d.108.1.1 126600 2ob0A 170 4.95e-20 2cntA 160 1.09e-19 2j8mA 172 1.90e-19 1vhsA 175 2.00e-19 d.108.1.1 100698 1tiqA 180 2.87e-19 d.108.1.1 107010 1yr0A 175 3.15e-19 d.108.1.1 123905 2b5gA 171 5.31e-19 d.108.1.1 127892 2ge3A 170 5.71e-19 d.108.1.1 135044 1yvoA 172 8.83e-19 d.108.1.1 124106 2pdoA 144 9.72e-19 2cy2A 174 1.17e-18 d.108.1.1 131016 2q4vA 170 1.43e-18 d.108.1.1 139878 1mk4A 157 1.87e-18 d.108.1.1 84979 1s3zA 165 1.93e-18 d.108.1.1 105250 1kuxA 207 1.99e-18 d.108.1.1 73021 2i6cA 160 2.29e-18 d.108.1.1 137095 2fe7A 166 2.29e-18 d.108.1.1 133325 2fiaA 162 2.42e-18 d.108.1.1 133514 2r7hA 177 3.72e-18 2dxqA 150 4.16e-18 1l0cA 207 4.22e-18 d.108.1.1 73393 2reeA 224 4.45e-18 3blnA 143 4.98e-18 1gheA 177 6.17e-18 d.108.1.1 76222 2oh1A 179 7.08e-18 2euiA 153 7.50e-18 d.108.1.1 132387 3c26A 266 7.96e-18 1nslA 184 8.84e-18 d.108.1.1 86137 1yreA 197 9.14e-18 d.108.1.1 123919 2fl4A 149 1.09e-17 d.108.1.1 133706 1y9kA 157 1.78e-17 d.108.1.1 122779 1z4eA 153 2.04e-17 d.108.1.1 124431 1z4rA 168 3.63e-17 d.108.1.1 124444 1qsmA 152 5.79e-17 d.108.1.1 40808 1on0A 158 6.41e-17 d.108.1.1 87095 1qsoA 149 7.61e-17 d.108.1.1 40812 1wwzA 159 8.80e-17 d.108.1.1 121380 2i79A 172 9.00e-17 1s7kA 182 9.41e-17 d.108.1.1 118878 2o28A 184 1.04e-16 1b87A 181 1.05e-16 d.108.1.1 40797 2a4nA 182 1.09e-16 d.108.1.1 126159 1u6mA 199 1.14e-16 d.108.1.1 113069 2r1iA 172 1.21e-16 2fiwA 172 1.42e-16 d.108.1.1 133539 1yvkA 163 1.55e-16 d.108.1.1 124101 2ozgA 396 1.94e-16 2hv2A 400 2.45e-16 1xebA 150 2.49e-16 d.108.1.1 115219 1q2yA 140 2.70e-16 d.108.1.1 95655 1cjwA 166 3.04e-16 d.108.1.1 40818 1yx0A 159 4.37e-16 d.108.1.1 124168 1yghA 164 5.32e-16 d.108.1.1 40802 1qstA 160 5.84e-16 d.108.1.1 40804 1sqhA 312 7.05e-16 d.108.1.5 98966 2bswA 146 8.73e-16 d.108.1.1 129127 1y7rA 133 9.45e-16 d.108.1.1 122716 2qecA 204 1.02e-15 1bo4A 168 1.19e-15 d.108.1.1 40798 1i1dA 161 1.39e-15 d.108.1.1 61526 2fckA 181 1.51e-15 d.108.1.1 133272 2i00A 406 1.73e-15 2q0yA 153 1.92e-15 2ft0A 235 2.77e-15 2pc1A 201 2.87e-15 2c27A 315 3.06e-15 d.108.1.1 129659 1yk3A 210 3.27e-15 d.108.1.1 123493 1vkcA 158 3.60e-15 d.108.1.1 113663 2atrA 138 3.94e-15 d.108.1.1 127305 1n71A 180 4.78e-15 d.108.1.1 85370 1y9wA 140 6.00e-15 d.108.1.1 122783 2jdcA 146 1.10e-14 2g3aA 152 1.50e-14 d.108.1.1 134557 1i12A 160 1.66e-14 d.108.1.1 61515 1m4iA 181 2.57e-14 d.108.1.1 74457 2ozhA 142 5.78e-14 2fsrA 195 1.66e-13 d.108.1.1 134036 2ganA 190 1.83e-13 d.108.1.1 134889 1p0hA 318 2.94e-13 d.108.1.1 93866 2prbA 196 1.65e-11 2qmlA 198 2.22e-11 2z10A 194 5.38e-11 2aj6A 159 7.88e-07 d.108.1.1 126841 1ro5A 201 8.97e-06 d.108.1.3 105023 2g0bA 198 4.84e-05 2r98A 456 0.000119 1ne9A 335 0.001866 d.108.1.4,d.108.1.4 91839,91840 1iicA 422 0.002389 d.108.1.2,d.108.1.2 62422,62423 2q04A 211 0.004706 1xmtA 103 0.03112 d.108.1.1 115561 2pq8A 278 0.03256 1yleA 342 0.03874 d.108.1.8 123647 1kzfA 230 0.05357 d.108.1.3 73354 2givA 295 0.05453 d.108.1.1 135253 1bob 320 0.07067 1bobA 320 0.1527 d.108.1.1 40816 2p0wA 324 0.2258 1lrzA 426 0.2417 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1svjA 156 0.7797 d.220.1.1 106049 1fy7A 278 0.8926 d.108.1.1 40817 2d59A 144 1.724 c.2.1.8 131266 2hqyA 305 4.244 1f1xA 322 5.649 d.32.1.3,d.32.1.3 83208,83209 2cxaA 256 6.873 d.108.1.6 130993 2uubK 129 8.634 c.55.4.1 139942 1pvmA 184 9.311 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2pdrA 149 10.56 2v0uA 146 16.42 1o50A 157 16.93 d.37.1.1,d.37.1.1 92478,92479 1kllA 130 18.14 d.32.1.2 72720 1p0zA 131 19.50 d.110.6.1 93882 1kw3B 292 20.12 d.32.1.3,d.32.1.3 77549,77550 1f1uA 323 24.63 d.32.1.3,d.32.1.3 83200,83201 1ecsA 126 24.74 d.32.1.2 59407 2vqeK 129 26.12 2d73A 738 26.28 2pd8A 149 27.02 1ss4A 153 27.48 d.32.1.6 105976 2ehzA 302 30.23 2gj3A 120 31.75 1qipA 183 32.11 d.32.1.1 38470 2ef7A 133 32.20 2yzqA 282 34.06 1r9cA 139 34.78 d.32.1.2 97255 1n9lA 109 36.79 d.110.3.6 85468 1han 297 38.96 1nkiA 135 39.70 d.32.1.2 91941 2pfiA 164 41.13 1qtoA 122 41.33 d.32.1.2 38494 2e5vA 472 42.56 1ve0A 134 42.85 1n9bA 265 43.32 e.3.1.1 85463 2oxnA 340 50.27 2a4xA 138 50.86 d.32.1.2 126166 1xkfA 133 51.14 d.37.1.1,d.37.1.1 122077,122078 2i7rA 118 51.49 d.32.1.2 137102 2ouxA 286 51.68 1usgA 346 52.60 c.93.1.1 99864 1yfsA 465 55.04 a.203.1.1,d.104.1.1 123088,123089 1jnuA 104 57.01 d.110.3.6 71762 1c0pA 363 57.59 c.4.1.2,d.16.1.3 30647,37934 1yavA 159 59.26 d.37.1.1,d.37.1.1 116595,116596 1zoyA 622 61.11 1z15A 344 62.14 1vr9A 213 62.40 d.37.1.1,d.37.1.1 120446,120447 1pn2A 280 62.55 d.38.1.4,d.38.1.4 94930,94931 3ce9A 354 63.83 1pzsA 208 63.87 b.1.8.1 104397 2d4pA 141 64.79 1lkdA 297 64.96 d.32.1.3,d.32.1.3 78059,78060 2b18A 164 67.12 1pbjA 125 68.46 d.37.1.1,d.37.1.1 94414,94415 1k1eA 180 69.03 c.108.1.5 67995 2o16A 160 69.91 d.37.1.1,d.37.1.1 138869,138870 1fa8A 135 70.32 d.32.1.1 38486 2hvwA 184 71.51 1f9zA 135 71.60 d.32.1.1 38484 2qh0A 138 73.70 1tq8A 163 74.61 c.26.2.4 107204 2bmfA 451 75.41 c.37.1.14,c.37.1.14 128791,128792 1vdmA 153 77.05 c.61.1.1 119994 1bywA 110 78.12 d.110.3.6 40912 1fjgK 129 79.22 c.55.4.1 33733 2q0lA 311 79.48 1xqaA 113 81.32 d.32.1.2 115837 2iyeA 263 82.66 1y5hA 133 83.12 d.37.1.1,d.37.1.1 122635,122636 2uv4A 152 83.40 2qyxA 238 85.10 2rgqA 144 86.14 2qqzA 126 87.40 1twuA 139 88.55 d.32.1.8 107413 2nycA 144 88.62 d.37.1.1 138812