# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 2.45e-20 d.108.1.1 126600 2ob0A 170 7.02e-20 2cntA 160 1.20e-19 1tiqA 180 3.46e-19 d.108.1.1 107010 1vhsA 175 4.22e-19 d.108.1.1 100698 2j8mA 172 4.71e-19 2b5gA 171 7.71e-19 d.108.1.1 127892 2pdoA 144 1.20e-18 2cy2A 174 1.21e-18 d.108.1.1 131016 1kuxA 207 1.38e-18 d.108.1.1 73021 1yvoA 172 2.24e-18 d.108.1.1 124106 1yr0A 175 2.24e-18 d.108.1.1 123905 1mk4A 157 2.33e-18 d.108.1.1 84979 2i6cA 160 2.55e-18 d.108.1.1 137095 2fiaA 162 2.74e-18 d.108.1.1 133514 2q4vA 170 2.78e-18 d.108.1.1 139878 2reeA 224 3.41e-18 3blnA 143 3.86e-18 1l0cA 207 4.05e-18 d.108.1.1 73393 1s3zA 165 4.12e-18 d.108.1.1 105250 2ge3A 170 4.33e-18 d.108.1.1 135044 3c26A 266 4.55e-18 2r7hA 177 4.96e-18 2dxqA 150 5.11e-18 2fe7A 166 6.33e-18 d.108.1.1 133325 1yreA 197 6.64e-18 d.108.1.1 123919 1gheA 177 1.31e-17 d.108.1.1 76222 2euiA 153 1.40e-17 d.108.1.1 132387 1nslA 184 1.59e-17 d.108.1.1 86137 1b87A 181 2.09e-17 d.108.1.1 40797 1z4eA 153 2.16e-17 d.108.1.1 124431 2fl4A 149 2.19e-17 d.108.1.1 133706 1s7kA 182 2.69e-17 d.108.1.1 118878 2oh1A 179 2.85e-17 1y9kA 157 3.40e-17 d.108.1.1 122779 1z4rA 168 5.35e-17 d.108.1.1 124444 1xebA 150 9.63e-17 d.108.1.1 115219 2r1iA 172 1.04e-16 2a4nA 182 1.14e-16 d.108.1.1 126159 1qsmA 152 1.15e-16 d.108.1.1 40808 1on0A 158 1.25e-16 d.108.1.1 87095 1wwzA 159 1.37e-16 d.108.1.1 121380 1yghA 164 1.46e-16 d.108.1.1 40802 2o28A 184 1.49e-16 2ozgA 396 1.65e-16 1u6mA 199 1.80e-16 d.108.1.1 113069 1q2yA 140 2.02e-16 d.108.1.1 95655 1qsoA 149 2.04e-16 d.108.1.1 40812 1yvkA 163 2.14e-16 d.108.1.1 124101 2hv2A 400 2.46e-16 1sqhA 312 2.61e-16 d.108.1.5 98966 1cjwA 166 2.92e-16 d.108.1.1 40818 1yx0A 159 3.56e-16 d.108.1.1 124168 1qstA 160 4.10e-16 d.108.1.1 40804 2i79A 172 4.13e-16 1y7rA 133 4.75e-16 d.108.1.1 122716 2fiwA 172 9.15e-16 d.108.1.1 133539 2bswA 146 9.32e-16 d.108.1.1 129127 2qecA 204 1.03e-15 2fckA 181 1.49e-15 d.108.1.1 133272 1n71A 180 1.74e-15 d.108.1.1 85370 1yk3A 210 2.27e-15 d.108.1.1 123493 2ft0A 235 2.31e-15 1bo4A 168 2.39e-15 d.108.1.1 40798 1i1dA 161 2.58e-15 d.108.1.1 61526 2pc1A 201 2.64e-15 2atrA 138 2.70e-15 d.108.1.1 127305 2c27A 315 3.03e-15 d.108.1.1 129659 2q0yA 153 3.18e-15 1vkcA 158 3.35e-15 d.108.1.1 113663 2i00A 406 3.53e-15 1y9wA 140 5.37e-15 d.108.1.1 122783 2jdcA 146 1.15e-14 1m4iA 181 1.24e-14 d.108.1.1 74457 2g3aA 152 1.60e-14 d.108.1.1 134557 1i12A 160 4.43e-14 d.108.1.1 61515 2ganA 190 1.03e-13 d.108.1.1 134889 2fsrA 195 1.18e-13 d.108.1.1 134036 2ozhA 142 1.47e-13 1p0hA 318 2.70e-13 d.108.1.1 93866 2qmlA 198 7.98e-12 2prbA 196 1.26e-11 2z10A 194 1.99e-10 2aj6A 159 5.90e-06 d.108.1.1 126841 1ro5A 201 2.00e-05 d.108.1.3 105023 2g0bA 198 0.000203 2r98A 456 0.000704 1ne9A 335 0.003236 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.005600 1iicA 422 0.007050 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.04976 d.108.1.1 115561 2pq8A 278 0.1026 2givA 295 0.1704 d.108.1.1 135253 1bob 320 0.1706 1bobA 320 0.4420 d.108.1.1 40816 1kzfA 230 0.4524 d.108.1.3 73354 1yleA 342 0.6668 d.108.1.8 123647 2p0wA 324 0.6928 1fy7A 278 0.8589 d.108.1.1 40817 1svjA 156 0.9243 d.220.1.1 106049 2d59A 144 2.570 c.2.1.8 131266 1lrzA 426 6.392 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2pdrA 149 11.79 1pvmA 184 14.67 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2hqyA 305 17.03 2v0uA 146 20.25 2qqzA 126 24.52 1kllA 130 26.15 d.32.1.2 72720 1han 297 28.88 1f1xA 322 30.00 d.32.1.3,d.32.1.3 83208,83209 2gj3A 120 30.80 2ehzA 302 32.56 1m5q1 130 32.97 2cxaA 256 33.85 d.108.1.6 130993 2pd8A 149 34.59 2rgqA 144 35.88 1n9bA 265 38.69 e.3.1.1 85463 2cvbA 188 38.80 c.47.1.10 130859 3c8cA 240 43.01 1f1uA 323 45.50 d.32.1.3,d.32.1.3 83200,83201 1q2lA 939 45.96 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2uubK 129 46.25 c.55.4.1 139942 1p0zA 131 46.91 d.110.6.1 93882 2pr5A 132 47.69 1nkiA 135 49.58 d.32.1.2 91941 2a8eA 220 49.93 d.296.1.1 126397 1ct5A 256 50.69 c.1.6.2 28663 1z15A 344 53.82 2ouxA 286 54.03 1kw3B 292 54.17 d.32.1.3,d.32.1.3 77549,77550 1n9lA 109 56.21 d.110.3.6 85468 1f9zA 135 56.63 d.32.1.1 38484 1o50A 157 56.84 d.37.1.1,d.37.1.1 92478,92479 1ecsA 126 57.56 d.32.1.2 59407 1iznB 277 60.18 e.43.1.2 83848 2ewcA 126 60.95 d.79.1.1 132454 3b47A 134 62.35 1y9uA 323 62.65 c.94.1.1 116594 1xkfA 133 65.12 d.37.1.1,d.37.1.1 122077,122078 1xrkA 124 66.61 d.32.1.2 115881 1s6lA 212 66.73 2ef7A 133 67.33 2qr3A 140 67.34 2e5vA 472 68.15 1qipA 183 73.18 d.32.1.1 38470 2mprA 421 74.20 f.4.3.2 43788 2b7kA 200 74.39 c.47.1.10 128042 1bywA 110 75.80 d.110.3.6 40912 1lkdA 297 76.89 d.32.1.3,d.32.1.3 78059,78060 1c0pA 363 79.28 c.4.1.2,d.16.1.3 30647,37934 1xtaA 221 79.89 2pjkA 178 80.08 2higA 487 80.77 2cxcA 144 82.04 1hw7A 255 82.31 d.193.1.1 61297 1qtoA 122 82.74 d.32.1.2 38494 1qd9A 124 85.03 d.79.1.1 39758 2oxnA 340 85.69 2i4aA 107 86.68 1oniA 137 87.91 d.79.1.1 87144 1qahA 136 89.28 d.79.1.1 96338 2hmaA 376 89.96