# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 3.80e-20 d.108.1.1 126600 2ob0A 170 7.48e-20 2cntA 160 1.53e-19 1tiqA 180 5.03e-19 d.108.1.1 107010 2b5gA 171 5.21e-19 d.108.1.1 127892 2j8mA 172 5.70e-19 1vhsA 175 9.67e-19 d.108.1.1 100698 2pdoA 144 1.10e-18 2cy2A 174 1.38e-18 d.108.1.1 131016 1kuxA 207 1.39e-18 d.108.1.1 73021 1yr0A 175 2.85e-18 d.108.1.1 123905 2q4vA 170 3.00e-18 d.108.1.1 139878 1yvoA 172 3.17e-18 d.108.1.1 124106 1mk4A 157 3.27e-18 d.108.1.1 84979 2i6cA 160 3.35e-18 d.108.1.1 137095 2fiaA 162 3.40e-18 d.108.1.1 133514 2reeA 224 3.84e-18 1s3zA 165 4.16e-18 d.108.1.1 105250 2dxqA 150 4.70e-18 2r7hA 177 4.72e-18 1l0cA 207 5.01e-18 d.108.1.1 73393 3blnA 143 5.24e-18 2ge3A 170 5.25e-18 d.108.1.1 135044 3c26A 266 6.27e-18 1yreA 197 7.14e-18 d.108.1.1 123919 2fe7A 166 7.25e-18 d.108.1.1 133325 1gheA 177 1.31e-17 d.108.1.1 76222 2euiA 153 1.45e-17 d.108.1.1 132387 1z4eA 153 2.17e-17 d.108.1.1 124431 2fl4A 149 2.37e-17 d.108.1.1 133706 1nslA 184 2.44e-17 d.108.1.1 86137 2oh1A 179 2.72e-17 1b87A 181 3.34e-17 d.108.1.1 40797 1y9kA 157 3.41e-17 d.108.1.1 122779 1s7kA 182 3.95e-17 d.108.1.1 118878 1z4rA 168 7.00e-17 d.108.1.1 124444 2r1iA 172 8.99e-17 1xebA 150 1.11e-16 d.108.1.1 115219 1qsmA 152 1.17e-16 d.108.1.1 40808 2o28A 184 1.36e-16 2ozgA 396 1.50e-16 1on0A 158 1.60e-16 d.108.1.1 87095 1sqhA 312 1.98e-16 d.108.1.5 98966 2a4nA 182 1.98e-16 d.108.1.1 126159 1qsoA 149 2.05e-16 d.108.1.1 40812 1q2yA 140 2.17e-16 d.108.1.1 95655 1wwzA 159 2.28e-16 d.108.1.1 121380 1u6mA 199 2.28e-16 d.108.1.1 113069 1yvkA 163 2.44e-16 d.108.1.1 124101 2hv2A 400 2.73e-16 1yghA 164 3.54e-16 d.108.1.1 40802 1yx0A 159 3.61e-16 d.108.1.1 124168 1cjwA 166 3.71e-16 d.108.1.1 40818 1y7rA 133 5.06e-16 d.108.1.1 122716 2i79A 172 5.07e-16 1qstA 160 6.92e-16 d.108.1.1 40804 2bswA 146 1.03e-15 d.108.1.1 129127 2fiwA 172 1.22e-15 d.108.1.1 133539 2qecA 204 1.46e-15 1i1dA 161 2.20e-15 d.108.1.1 61526 2fckA 181 2.26e-15 d.108.1.1 133272 1n71A 180 2.63e-15 d.108.1.1 85370 1yk3A 210 2.84e-15 d.108.1.1 123493 2ft0A 235 3.03e-15 2c27A 315 3.04e-15 d.108.1.1 129659 2atrA 138 3.35e-15 d.108.1.1 127305 1bo4A 168 3.44e-15 d.108.1.1 40798 2q0yA 153 3.58e-15 2i00A 406 4.45e-15 2pc1A 201 4.71e-15 1vkcA 158 6.48e-15 d.108.1.1 113663 1y9wA 140 7.65e-15 d.108.1.1 122783 2jdcA 146 1.41e-14 1m4iA 181 1.55e-14 d.108.1.1 74457 2g3aA 152 2.25e-14 d.108.1.1 134557 1i12A 160 4.33e-14 d.108.1.1 61515 2ganA 190 1.08e-13 d.108.1.1 134889 2ozhA 142 1.46e-13 2fsrA 195 1.53e-13 d.108.1.1 134036 1p0hA 318 3.27e-13 d.108.1.1 93866 2qmlA 198 1.16e-11 2prbA 196 2.08e-11 2z10A 194 1.86e-10 2aj6A 159 8.68e-06 d.108.1.1 126841 1ro5A 201 3.26e-05 d.108.1.3 105023 2g0bA 198 0.000344 2r98A 456 0.000807 1ne9A 335 0.005215 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.005805 1iicA 422 0.006297 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.05390 d.108.1.1 115561 2pq8A 278 0.1188 2givA 295 0.1681 d.108.1.1 135253 1bob 320 0.3288 1bobA 320 0.5748 d.108.1.1 40816 2p0wA 324 0.7644 1svjA 156 0.8596 d.220.1.1 106049 1yleA 342 0.8632 d.108.1.8 123647 1fy7A 278 0.9849 d.108.1.1 40817 1kzfA 230 1.562 d.108.1.3 73354 2d59A 144 2.689 c.2.1.8 131266 1lrzA 426 4.718 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2pdrA 149 17.51 1pvmA 184 19.29 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2hqyA 305 19.34 2v0uA 146 21.06 1m5q1 130 31.54 1kllA 130 32.67 d.32.1.2 72720 2rgqA 144 32.72 2cvbA 188 34.39 c.47.1.10 130859 1q2lA 939 37.83 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2pjkA 178 42.78 1ct5A 256 42.92 c.1.6.2 28663 1n9bA 265 43.79 e.3.1.1 85463 2qqzA 126 45.88 2pr5A 132 46.40 2pd8A 149 49.78 1f1xA 322 50.14 d.32.1.3,d.32.1.3 83208,83209 1c0pA 363 52.10 c.4.1.2,d.16.1.3 30647,37934 2gj3A 120 54.57 1z15A 344 54.77 3b47A 134 57.64 1han 297 58.27 2a8eA 220 58.46 d.296.1.1 126397 1o50A 157 58.52 d.37.1.1,d.37.1.1 92478,92479 2ehzA 302 58.99 2uubK 129 61.92 c.55.4.1 139942 2go9A 161 65.63 2b7kA 200 66.33 c.47.1.10 128042 3c8cA 240 66.92 1xtaA 221 69.31 1tkeA 224 72.38 d.15.10.1,d.67.1.1 112470,112471 2i4aA 107 75.88 1p0zA 131 76.05 d.110.6.1 93882 2higA 487 76.37 1zoyA 622 79.19 2qr3A 140 80.22 2ouxA 286 80.62 1ecsA 126 80.81 d.32.1.2 59407 1f1uA 323 81.98 d.32.1.3,d.32.1.3 83200,83201 2e5vA 472 82.63 1iznB 277 83.04 e.43.1.2 83848 2dcnA 311 84.75 c.72.1.1 131374