# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 1.92e-21 d.108.1.1 126600 2ob0A 170 3.33e-21 2cntA 160 7.66e-21 1tiqA 180 2.38e-20 d.108.1.1 107010 2b5gA 171 3.49e-20 d.108.1.1 127892 2j8mA 172 3.61e-20 1vhsA 175 4.46e-20 d.108.1.1 100698 2pdoA 144 6.99e-20 2cy2A 174 7.36e-20 d.108.1.1 131016 1kuxA 207 7.62e-20 d.108.1.1 73021 1yr0A 175 1.68e-19 d.108.1.1 123905 1mk4A 157 1.71e-19 d.108.1.1 84979 2i6cA 160 2.03e-19 d.108.1.1 137095 2q4vA 170 2.08e-19 d.108.1.1 139878 2fiaA 162 2.33e-19 d.108.1.1 133514 1yvoA 172 2.43e-19 d.108.1.1 124106 2reeA 224 2.55e-19 3blnA 143 2.85e-19 1l0cA 207 3.07e-19 d.108.1.1 73393 2dxqA 150 3.61e-19 2r7hA 177 3.91e-19 1s3zA 165 4.25e-19 d.108.1.1 105250 2fe7A 166 4.27e-19 d.108.1.1 133325 2ge3A 170 4.35e-19 d.108.1.1 135044 3c26A 266 4.54e-19 1yreA 197 5.99e-19 d.108.1.1 123919 2euiA 153 8.76e-19 d.108.1.1 132387 1gheA 177 1.01e-18 d.108.1.1 76222 1nslA 184 1.68e-18 d.108.1.1 86137 2fl4A 149 1.69e-18 d.108.1.1 133706 1z4eA 153 2.08e-18 d.108.1.1 124431 2oh1A 179 2.15e-18 1b87A 181 2.59e-18 d.108.1.1 40797 1y9kA 157 3.95e-18 d.108.1.1 122779 1s7kA 182 4.08e-18 d.108.1.1 118878 1z4rA 168 6.22e-18 d.108.1.1 124444 2r1iA 172 6.94e-18 1xebA 150 8.77e-18 d.108.1.1 115219 1wwzA 159 1.10e-17 d.108.1.1 121380 1qsmA 152 1.12e-17 d.108.1.1 40808 1on0A 158 1.19e-17 d.108.1.1 87095 2o28A 184 1.37e-17 2ozgA 396 1.39e-17 1u6mA 199 1.44e-17 d.108.1.1 113069 1q2yA 140 1.77e-17 d.108.1.1 95655 1sqhA 312 1.84e-17 d.108.1.5 98966 2a4nA 182 2.16e-17 d.108.1.1 126159 1qsoA 149 2.20e-17 d.108.1.1 40812 1yghA 164 2.30e-17 d.108.1.1 40802 1yvkA 163 2.70e-17 d.108.1.1 124101 2hv2A 400 2.93e-17 1cjwA 166 3.24e-17 d.108.1.1 40818 1yx0A 159 3.24e-17 d.108.1.1 124168 2i79A 172 4.83e-17 1y7rA 133 5.92e-17 d.108.1.1 122716 1qstA 160 6.79e-17 d.108.1.1 40804 2bswA 146 1.13e-16 d.108.1.1 129127 2fiwA 172 1.22e-16 d.108.1.1 133539 2qecA 204 1.34e-16 2fckA 181 2.30e-16 d.108.1.1 133272 1i1dA 161 2.41e-16 d.108.1.1 61526 2c27A 315 2.53e-16 d.108.1.1 129659 1n71A 180 3.20e-16 d.108.1.1 85370 2atrA 138 3.50e-16 d.108.1.1 127305 2ft0A 235 3.57e-16 2q0yA 153 3.58e-16 1bo4A 168 3.90e-16 d.108.1.1 40798 2pc1A 201 4.53e-16 1yk3A 210 5.42e-16 d.108.1.1 123493 2i00A 406 6.06e-16 1y9wA 140 7.70e-16 d.108.1.1 122783 1vkcA 158 7.89e-16 d.108.1.1 113663 2jdcA 146 1.44e-15 1m4iA 181 1.55e-15 d.108.1.1 74457 2g3aA 152 3.05e-15 d.108.1.1 134557 1i12A 160 6.53e-15 d.108.1.1 61515 2fsrA 195 1.82e-14 d.108.1.1 134036 2ganA 190 1.90e-14 d.108.1.1 134889 2ozhA 142 2.03e-14 1p0hA 318 4.53e-14 d.108.1.1 93866 2qmlA 198 2.81e-12 2prbA 196 4.99e-12 2z10A 194 6.48e-11 2aj6A 159 4.35e-06 d.108.1.1 126841 1ro5A 201 1.35e-05 d.108.1.3 105023 2g0bA 198 0.000196 2r98A 456 0.000394 1ne9A 335 0.003641 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.004168 1iicA 422 0.004190 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.04615 d.108.1.1 115561 2pq8A 278 0.1166 2givA 295 0.1808 d.108.1.1 135253 1bob 320 0.1892 1bobA 320 0.3708 d.108.1.1 40816 1svjA 156 0.7416 d.220.1.1 106049 2p0wA 324 0.7450 1yleA 342 0.7582 d.108.1.8 123647 1kzfA 230 0.8935 d.108.1.3 73354 1fy7A 278 1.058 d.108.1.1 40817 2d59A 144 1.693 c.2.1.8 131266 1lrzA 426 3.960 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2pdrA 149 11.89 2hqyA 305 15.39 1pvmA 184 16.73 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2v0uA 146 18.22 1m5q1 130 24.48 1n9bA 265 24.78 e.3.1.1 85463 2pjkA 178 27.75 2rgqA 144 28.34 1kllA 130 31.28 d.32.1.2 72720 2cvbA 188 35.47 c.47.1.10 130859 2pd8A 149 36.37 1ct5A 256 40.55 c.1.6.2 28663 2uubK 129 40.66 c.55.4.1 139942 2a8eA 220 41.05 d.296.1.1 126397 2pr5A 132 45.30 3c8cA 240 47.03 2gj3A 120 48.17 1o50A 157 49.38 d.37.1.1,d.37.1.1 92478,92479 2qqzA 126 50.86 1xkfA 133 51.40 d.37.1.1,d.37.1.1 122077,122078 1q2lA 939 53.43 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2ef7A 133 53.49 1iznB 277 60.81 e.43.1.2 83848 1z15A 344 61.22 1c0pA 363 61.93 c.4.1.2,d.16.1.3 30647,37934 3b47A 134 62.89 1p0zA 131 64.70 d.110.6.1 93882 2oxnA 340 65.46 2b7kA 200 65.96 c.47.1.10 128042 1s6lA 212 66.62 1tkeA 224 69.74 d.15.10.1,d.67.1.1 112470,112471 2qr3A 140 70.01 1f1xA 322 70.84 d.32.1.3,d.32.1.3 83208,83209 1xtaA 221 71.34 2go9A 161 72.02 1xw2A 405 73.53 a.102.1.2 122389 2higA 487 73.54 2qytA 317 73.96 1zoyA 622 75.78 1n9lA 109 77.09 d.110.3.6 85468 2ouxA 286 79.55 1ecsA 126 81.82 d.32.1.2 59407 1han 297 84.73