# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ob0A 170 3.60e-18 2ae6A 166 6.08e-18 d.108.1.1 126600 2j8mA 172 1.00e-17 2cntA 160 1.40e-17 1yr0A 175 2.52e-17 d.108.1.1 123905 1vhsA 175 2.65e-17 d.108.1.1 100698 1tiqA 180 2.69e-17 d.108.1.1 107010 2ge3A 170 3.15e-17 d.108.1.1 135044 1mk4A 157 6.24e-17 d.108.1.1 84979 1yvoA 172 1.11e-16 d.108.1.1 124106 2b5gA 171 1.44e-16 d.108.1.1 127892 3blnA 143 1.58e-16 2q4vA 170 1.89e-16 d.108.1.1 139878 2cy2A 174 2.34e-16 d.108.1.1 131016 2i6cA 160 2.84e-16 d.108.1.1 137095 2pdoA 144 3.60e-16 1nslA 184 3.82e-16 d.108.1.1 86137 1yreA 197 4.00e-16 d.108.1.1 123919 2fiaA 162 4.82e-16 d.108.1.1 133514 1kuxA 207 4.84e-16 d.108.1.1 73021 1s3zA 165 5.28e-16 d.108.1.1 105250 2fe7A 166 6.72e-16 d.108.1.1 133325 1l0cA 207 7.09e-16 d.108.1.1 73393 1s7kA 182 8.57e-16 d.108.1.1 118878 2reeA 224 9.20e-16 2r7hA 177 1.12e-15 2dxqA 150 1.15e-15 2euiA 153 1.18e-15 d.108.1.1 132387 2oh1A 179 1.23e-15 1gheA 177 1.43e-15 d.108.1.1 76222 1z4eA 153 2.29e-15 d.108.1.1 124431 3c26A 266 3.03e-15 2i79A 172 3.54e-15 1b87A 181 4.86e-15 d.108.1.1 40797 1qsmA 152 7.75e-15 d.108.1.1 40808 1sqhA 312 8.56e-15 d.108.1.5 98966 1u6mA 199 8.78e-15 d.108.1.1 113069 1on0A 158 8.95e-15 d.108.1.1 87095 1qsoA 149 9.86e-15 d.108.1.1 40812 1yx0A 159 1.17e-14 d.108.1.1 124168 2hv2A 400 1.17e-14 2r1iA 172 1.18e-14 1xebA 150 1.46e-14 d.108.1.1 115219 1cjwA 166 1.52e-14 d.108.1.1 40818 1z4rA 168 1.81e-14 d.108.1.1 124444 2o28A 184 2.03e-14 2qecA 204 2.05e-14 1y9kA 157 2.44e-14 d.108.1.1 122779 2fl4A 149 2.63e-14 d.108.1.1 133706 2ozgA 396 3.16e-14 2fckA 181 3.17e-14 d.108.1.1 133272 2pc1A 201 3.38e-14 1wwzA 159 3.91e-14 d.108.1.1 121380 1qstA 160 4.44e-14 d.108.1.1 40804 1q2yA 140 5.16e-14 d.108.1.1 95655 2ft0A 235 6.19e-14 1yvkA 163 6.47e-14 d.108.1.1 124101 1yghA 164 8.27e-14 d.108.1.1 40802 1yk3A 210 1.04e-13 d.108.1.1 123493 2i00A 406 1.19e-13 1i1dA 161 1.19e-13 d.108.1.1 61526 2a4nA 182 1.22e-13 d.108.1.1 126159 1y7rA 133 1.40e-13 d.108.1.1 122716 2bswA 146 1.70e-13 d.108.1.1 129127 2fiwA 172 2.31e-13 d.108.1.1 133539 1vkcA 158 2.86e-13 d.108.1.1 113663 2q0yA 153 2.92e-13 1bo4A 168 3.22e-13 d.108.1.1 40798 2c27A 315 3.56e-13 d.108.1.1 129659 2jdcA 146 4.59e-13 1n71A 180 5.88e-13 d.108.1.1 85370 2atrA 138 7.24e-13 d.108.1.1 127305 1m4iA 181 8.30e-13 d.108.1.1 74457 2fsrA 195 1.09e-12 d.108.1.1 134036 1i12A 160 2.69e-12 d.108.1.1 61515 2ganA 190 7.05e-12 d.108.1.1 134889 1p0hA 318 9.31e-12 d.108.1.1 93866 2g3aA 152 2.13e-11 d.108.1.1 134557 1y9wA 140 2.14e-11 d.108.1.1 122783 2ozhA 142 2.66e-11 2prbA 196 6.69e-11 2qmlA 198 4.92e-10 2z10A 194 1.38e-09 2aj6A 159 1.55e-05 d.108.1.1 126841 1ro5A 201 4.93e-05 d.108.1.3 105023 2g0bA 198 0.000142 2r98A 456 0.000162 2q04A 211 0.007930 1iicA 422 0.01634 d.108.1.2,d.108.1.2 62422,62423 1ne9A 335 0.01844 d.108.1.4,d.108.1.4 91839,91840 1yleA 342 0.1296 d.108.1.8 123647 1xmtA 103 0.2867 d.108.1.1 115561 2givA 295 0.4738 d.108.1.1 135253 2pq8A 278 0.5851 1bob 320 0.6364 1bobA 320 0.7571 d.108.1.1 40816 2p0wA 324 1.501 1lrzA 426 3.014 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1svjA 156 3.482 d.220.1.1 106049 2hqyA 305 3.575 1fy7A 278 5.445 d.108.1.1 40817 2uubK 129 6.956 c.55.4.1 139942 1p0zA 131 8.070 d.110.6.1 93882 1pvmA 184 10.64 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2v0uA 146 11.89 2vqeK 129 20.66 1kzfA 230 21.27 d.108.1.3 73354 2pdrA 149 21.37 1han 297 31.48 2d59A 144 31.56 c.2.1.8 131266 1fjgK 129 34.82 c.55.4.1 33733 1o50A 157 42.38 d.37.1.1,d.37.1.1 92478,92479 2cjgA 449 47.62 2yzqA 282 48.13 1kllA 130 49.83 d.32.1.2 72720 1vr9A 213 50.55 d.37.1.1,d.37.1.1 120446,120447 1ecsA 126 51.20 d.32.1.2 59407 2dkfA 431 51.57 2jgyA 279 57.24 1xkfA 133 58.74 d.37.1.1,d.37.1.1 122077,122078 2nycA 144 63.44 d.37.1.1 138812 2pd8A 149 64.38 2cvlA 124 65.01 d.79.1.1 130871 2yvdA 431 67.46 1x25A 128 68.62 d.79.1.1 121619 2ef7A 133 69.42 1qipA 183 69.67 d.32.1.1 38470 1y5hA 133 72.58 d.37.1.1,d.37.1.1 122635,122636 1ps9A 671 74.77 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2e5vA 472 75.05 2o16A 160 78.87 d.37.1.1,d.37.1.1 138869,138870 1ghhA 81 78.96 d.57.1.1 38940 1ewkA 490 79.59 c.93.1.1 35712 3cvgA 294 79.62 2cxaA 256 83.46 d.108.1.6 130993 1nkiA 135 84.88 d.32.1.2 91941 2hp1A 432 85.58 1a9xB 379 87.46 c.8.3.1,c.23.16.1 30732,31409