# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 1.12e-18 d.108.1.1 126600 2cntA 160 1.55e-18 2ob0A 170 1.74e-18 2j8mA 172 5.10e-18 1tiqA 180 7.77e-18 d.108.1.1 107010 1yr0A 175 1.02e-17 d.108.1.1 123905 1vhsA 175 1.05e-17 d.108.1.1 100698 2b5gA 171 1.33e-17 d.108.1.1 127892 2cy2A 174 1.52e-17 d.108.1.1 131016 2pdoA 144 1.73e-17 2ge3A 170 2.15e-17 d.108.1.1 135044 1mk4A 157 2.48e-17 d.108.1.1 84979 2fiaA 162 3.19e-17 d.108.1.1 133514 1yvoA 172 3.64e-17 d.108.1.1 124106 1kuxA 207 4.03e-17 d.108.1.1 73021 1s3zA 165 5.20e-17 d.108.1.1 105250 2q4vA 170 5.60e-17 d.108.1.1 139878 2fe7A 166 6.98e-17 d.108.1.1 133325 2dxqA 150 7.45e-17 3blnA 143 7.54e-17 2i6cA 160 8.14e-17 d.108.1.1 137095 2r7hA 177 8.88e-17 1l0cA 207 9.48e-17 d.108.1.1 73393 2reeA 224 1.04e-16 2euiA 153 1.21e-16 d.108.1.1 132387 1gheA 177 1.40e-16 d.108.1.1 76222 3c26A 266 1.68e-16 2oh1A 179 2.19e-16 1yreA 197 2.28e-16 d.108.1.1 123919 1z4eA 153 3.08e-16 d.108.1.1 124431 1nslA 184 3.49e-16 d.108.1.1 86137 2fl4A 149 5.30e-16 d.108.1.1 133706 1y9kA 157 5.52e-16 d.108.1.1 122779 1b87A 181 5.57e-16 d.108.1.1 40797 1z4rA 168 5.64e-16 d.108.1.1 124444 1s7kA 182 5.70e-16 d.108.1.1 118878 2r1iA 172 8.93e-16 1wwzA 159 9.21e-16 d.108.1.1 121380 2i79A 172 1.33e-15 1qsoA 149 1.46e-15 d.108.1.1 40812 1on0A 158 1.48e-15 d.108.1.1 87095 1qsmA 152 1.59e-15 d.108.1.1 40808 2a4nA 182 1.70e-15 d.108.1.1 126159 1yghA 164 2.11e-15 d.108.1.1 40802 2hv2A 400 2.47e-15 2ozgA 396 2.86e-15 1u6mA 199 2.87e-15 d.108.1.1 113069 2o28A 184 3.24e-15 1xebA 150 3.26e-15 d.108.1.1 115219 1cjwA 166 3.78e-15 d.108.1.1 40818 1yvkA 163 4.12e-15 d.108.1.1 124101 1q2yA 140 4.51e-15 d.108.1.1 95655 1qstA 160 5.87e-15 d.108.1.1 40804 1sqhA 312 7.81e-15 d.108.1.5 98966 2qecA 204 8.47e-15 1yx0A 159 8.54e-15 d.108.1.1 124168 1y7rA 133 8.72e-15 d.108.1.1 122716 2fiwA 172 8.87e-15 d.108.1.1 133539 2bswA 146 9.24e-15 d.108.1.1 129127 1bo4A 168 1.32e-14 d.108.1.1 40798 2pc1A 201 2.00e-14 1yk3A 210 2.82e-14 d.108.1.1 123493 2ft0A 235 2.90e-14 2c27A 315 2.91e-14 d.108.1.1 129659 2q0yA 153 3.35e-14 2fckA 181 3.38e-14 d.108.1.1 133272 1n71A 180 4.42e-14 d.108.1.1 85370 2atrA 138 4.61e-14 d.108.1.1 127305 2i00A 406 4.86e-14 1y9wA 140 5.47e-14 d.108.1.1 122783 1i1dA 161 6.84e-14 d.108.1.1 61526 1m4iA 181 7.98e-14 d.108.1.1 74457 1vkcA 158 1.24e-13 d.108.1.1 113663 2jdcA 146 1.33e-13 2g3aA 152 2.19e-13 d.108.1.1 134557 1i12A 160 5.62e-13 d.108.1.1 61515 2ganA 190 1.23e-12 d.108.1.1 134889 2ozhA 142 1.56e-12 2fsrA 195 1.86e-12 d.108.1.1 134036 1p0hA 318 2.14e-12 d.108.1.1 93866 2prbA 196 9.32e-11 2qmlA 198 3.15e-10 2z10A 194 1.16e-09 2aj6A 159 6.60e-06 d.108.1.1 126841 1ro5A 201 2.63e-05 d.108.1.3 105023 2g0bA 198 0.000418 2r98A 456 0.001148 1ne9A 335 0.005983 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.006258 1iicA 422 0.02936 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.06066 d.108.1.1 115561 2pq8A 278 0.1309 2givA 295 0.1450 d.108.1.1 135253 1bob 320 0.2399 1kzfA 230 0.3211 d.108.1.3 73354 1yleA 342 0.4098 d.108.1.8 123647 1bobA 320 0.4958 d.108.1.1 40816 2p0wA 324 1.119 1fy7A 278 1.792 d.108.1.1 40817 2d59A 144 2.462 c.2.1.8 131266 1svjA 156 2.479 d.220.1.1 106049 1lrzA 426 2.999 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2hqyA 305 7.200 2cxaA 256 9.96 d.108.1.6 130993 1pvmA 184 11.25 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2v0uA 146 15.16 2pdrA 149 15.51 1han 297 17.77 1f1xA 322 19.37 d.32.1.3,d.32.1.3 83208,83209 2uubK 129 22.53 c.55.4.1 139942 1kllA 130 27.27 d.32.1.2 72720 1o50A 157 35.01 d.37.1.1,d.37.1.1 92478,92479 1p0zA 131 36.07 d.110.6.1 93882 2ehzA 302 38.55 2dyuA 334 39.28 1f1uA 323 39.93 d.32.1.3,d.32.1.3 83200,83201 1ss4A 153 46.42 d.32.1.6 105976 2pjkA 178 48.04 2pd8A 149 48.05 1ct5A 256 48.11 c.1.6.2 28663 1xtaA 221 51.18 2oxnA 340 54.41 1ecsA 126 55.44 d.32.1.2 59407 2rgqA 144 59.06 2d73A 738 59.09 2yzqA 282 59.50 2iyeA 263 59.74 1m5q1 130 63.56 1qipA 183 64.89 d.32.1.1 38470 1pzsA 208 66.52 b.1.8.1 104397 2c2iA 151 67.07 d.38.1.4 129670 2d4pA 141 67.70 1n9bA 265 71.63 e.3.1.1 85463 1y5hA 133 75.70 d.37.1.1,d.37.1.1 122635,122636 1xkfA 133 76.41 d.37.1.1,d.37.1.1 122077,122078 1lkdA 297 80.27 d.32.1.3,d.32.1.3 78059,78060 2gj3A 120 80.85 2b1kA 168 82.32 2a4xA 138 85.88 d.32.1.2 126166 2higA 487 86.51 2vqeK 129 86.69 1n9lA 109 86.87 d.110.3.6 85468 2cxcA 144 87.52 2hmaA 376 88.47 1s6lA 212 88.63 1k1eA 180 88.72 c.108.1.5 67995 2qh0A 138 89.50 3ce9A 354 89.96