# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 3.12e-18 d.108.1.1 126600 2ob0A 170 4.18e-18 2cntA 160 4.66e-18 2j8mA 172 1.08e-17 1tiqA 180 1.50e-17 d.108.1.1 107010 1vhsA 175 2.06e-17 d.108.1.1 100698 2cy2A 174 2.16e-17 d.108.1.1 131016 1yr0A 175 2.40e-17 d.108.1.1 123905 2b5gA 171 3.40e-17 d.108.1.1 127892 2pdoA 144 5.63e-17 2fiaA 162 5.77e-17 d.108.1.1 133514 2ge3A 170 6.43e-17 d.108.1.1 135044 1mk4A 157 7.06e-17 d.108.1.1 84979 1yvoA 172 9.94e-17 d.108.1.1 124106 1kuxA 207 1.15e-16 d.108.1.1 73021 3blnA 143 1.68e-16 1gheA 177 1.84e-16 d.108.1.1 76222 2q4vA 170 1.88e-16 d.108.1.1 139878 2r7hA 177 2.02e-16 2i6cA 160 2.10e-16 d.108.1.1 137095 2fe7A 166 2.11e-16 d.108.1.1 133325 2dxqA 150 2.29e-16 1l0cA 207 2.38e-16 d.108.1.1 73393 2euiA 153 2.39e-16 d.108.1.1 132387 2oh1A 179 2.72e-16 1s3zA 165 2.93e-16 d.108.1.1 105250 3c26A 266 3.89e-16 1yreA 197 4.66e-16 d.108.1.1 123919 2fl4A 149 6.94e-16 d.108.1.1 133706 1nslA 184 7.85e-16 d.108.1.1 86137 1z4rA 168 7.87e-16 d.108.1.1 124444 1qsoA 149 8.87e-16 d.108.1.1 40812 1z4eA 153 1.05e-15 d.108.1.1 124431 1b87A 181 1.10e-15 d.108.1.1 40797 1s7kA 182 1.11e-15 d.108.1.1 118878 1y9kA 157 1.60e-15 d.108.1.1 122779 2reeA 224 1.67e-15 1wwzA 159 1.70e-15 d.108.1.1 121380 1u6mA 199 1.91e-15 d.108.1.1 113069 2r1iA 172 2.05e-15 1yghA 164 2.94e-15 d.108.1.1 40802 1qsmA 152 3.38e-15 d.108.1.1 40808 1on0A 158 3.41e-15 d.108.1.1 87095 2i79A 172 3.79e-15 2ozgA 396 5.80e-15 1xebA 150 6.52e-15 d.108.1.1 115219 2a4nA 182 6.89e-15 d.108.1.1 126159 1qstA 160 7.21e-15 d.108.1.1 40804 1yvkA 163 7.44e-15 d.108.1.1 124101 1sqhA 312 7.56e-15 d.108.1.5 98966 2qecA 204 9.81e-15 2o28A 184 9.87e-15 1q2yA 140 1.11e-14 d.108.1.1 95655 1yx0A 159 1.39e-14 d.108.1.1 124168 2fiwA 172 1.46e-14 d.108.1.1 133539 1y7rA 133 1.63e-14 d.108.1.1 122716 1cjwA 166 1.69e-14 d.108.1.1 40818 2bswA 146 2.54e-14 d.108.1.1 129127 1bo4A 168 2.98e-14 d.108.1.1 40798 2pc1A 201 3.92e-14 1yk3A 210 4.62e-14 d.108.1.1 123493 1n71A 180 4.76e-14 d.108.1.1 85370 2ft0A 235 5.57e-14 2fckA 181 5.67e-14 d.108.1.1 133272 1i1dA 161 6.55e-14 d.108.1.1 61526 2atrA 138 7.85e-14 d.108.1.1 127305 2i00A 406 8.18e-14 2hv2A 400 9.79e-14 2q0yA 153 1.06e-13 1y9wA 140 1.25e-13 d.108.1.1 122783 2c27A 315 1.47e-13 d.108.1.1 129659 1m4iA 181 2.38e-13 d.108.1.1 74457 1vkcA 158 2.42e-13 d.108.1.1 113663 2jdcA 146 2.78e-13 2g3aA 152 2.88e-13 d.108.1.1 134557 1i12A 160 1.04e-12 d.108.1.1 61515 2ganA 190 1.62e-12 d.108.1.1 134889 2fsrA 195 2.75e-12 d.108.1.1 134036 2ozhA 142 3.99e-12 1p0hA 318 5.99e-12 d.108.1.1 93866 2prbA 196 4.69e-11 2qmlA 198 3.83e-10 2z10A 194 8.22e-10 2aj6A 159 1.37e-05 d.108.1.1 126841 1ro5A 201 2.88e-05 d.108.1.3 105023 2g0bA 198 0.000328 2r98A 456 0.004775 1ne9A 335 0.007458 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.01132 1iicA 422 0.05176 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.1100 2pq8A 278 0.1213 1xmtA 103 0.1356 d.108.1.1 115561 1kzfA 230 0.1570 d.108.1.3 73354 2p0wA 324 0.3424 1bobA 320 0.3473 d.108.1.1 40816 2cxaA 256 0.6315 d.108.1.6 130993 2givA 295 0.8344 d.108.1.1 135253 1fy7A 278 1.400 d.108.1.1 40817 1lrzA 426 1.443 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1yleA 342 1.616 d.108.1.8 123647 2d73A 738 1.961 1svjA 156 2.342 d.220.1.1 106049 2pdrA 149 3.161 2hqyA 305 3.887 2higA 487 4.010 2d59A 144 4.108 c.2.1.8 131266 1f1xA 322 5.252 d.32.1.3,d.32.1.3 83208,83209 1zfjA 491 5.389 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2uxyA 341 5.920 1m5q1 130 8.363 2e11A 266 8.771 2qmjA 870 8.793 2v0uA 146 9.483 1f1uA 323 11.67 d.32.1.3,d.32.1.3 83200,83201 2r7dA 469 11.92 1pvmA 184 13.67 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1uteA 313 13.74 d.159.1.1 42078 2dyuA 334 16.54 1n9bA 265 16.77 e.3.1.1 85463 1lvmA 229 17.27 b.47.1.3 78243 2uubK 129 18.65 c.55.4.1 139942 2ouxA 286 20.95 2d4pA 141 21.46 1s0aA 429 22.37 c.67.1.4 98263 1imbA 277 22.42 e.7.1.1 42957 2hcyA 347 22.44 1a0rB 340 23.01 b.69.4.1 27658 1d4xA 375 25.21 c.55.1.1,c.55.1.1 59107,59108 2ef7A 133 25.53 1wzaA 488 26.38 b.71.1.1,c.1.8.1 121489,121490 1r0mA 375 27.93 c.1.11.2,d.54.1.1 104747,104748 2b7kA 200 28.62 c.47.1.10 128042 1bf2 750 29.75 1reoA 486 30.82 c.3.1.2,d.16.1.5 97325,97326 1p0zA 131 33.16 d.110.6.1 93882 2oxnA 340 33.25 1pmiA 440 34.48 b.82.1.3 28114 2pd8A 149 34.71 1jdw 423 36.69 2fq6A 415 36.71 c.67.1.3 133939 2b1kA 168 37.34 2og2A 359 38.76 2pjkA 178 38.90 2rgqA 144 40.62 1gk9B 557 40.93 1yr2A 741 40.94 2h0rA 216 41.22 2fp3A 316 43.27 2basA 431 44.11 c.1.33.1,d.110.6.2 128244,128245 4blmA 265 44.22 e.3.1.1 42721 2v84A 343 45.97 1fxoA 293 46.21 c.68.1.6 34524 2qedA 258 47.09 1xjo 284 47.59 2culA 232 48.65 c.3.1.7 130813 1ejxC 567 49.12 b.92.1.1,c.1.9.2 83184,83185 2cvbA 188 49.54 c.47.1.10 130859 1potA 325 51.20 c.94.1.1 35807 1aszB 490 51.50 b.40.4.1,d.104.1.1 25241,40762 1xtaA 221 52.02 2p5qA 170 52.31 1v4pA 157 52.61 d.67.1.2 113533 2v3gA 283 52.95 1jihA 531 54.25 d.240.1.1,e.8.1.7 90374,90375 1iq6A 134 55.08 d.38.1.4 76755 1bw0A 416 55.22 c.67.1.1 34385 2f9sA 151 57.17 c.47.1.10 133168 1ecsA 126 59.25 d.32.1.2 59407 1jnuA 104 59.35 d.110.3.6 71762 2p5zX 491 60.06 2liv 344 60.87 1xtlA 175 61.19 1f9zA 135 63.15 d.32.1.1 38484 2eb4A 267 63.47 2p1zA 180 63.66 1k77A 260 64.28 c.1.15.5 72096 1kw3B 292 64.57 d.32.1.3,d.32.1.3 77549,77550 2bjiA 277 64.71 2pnwA 380 65.98 2ywiA 196 66.23 2yweA 600 66.52 1ct5A 256 67.25 c.1.6.2 28663 2dg1A 333 68.39 b.68.6.1 131493 1y9uA 323 68.72 c.94.1.1 116594 2ojhA 297 73.06 2fp8A 322 73.21 1xw2A 405 76.20 a.102.1.2 122389 1ermA 263 76.46 e.3.1.1 42690 2ajrA 331 77.32 c.72.1.1 126892 3bwlA 126 78.35 2sliA 679 78.46 b.29.1.9,b.68.1.1 24274,27611 1w36D 608 80.50 c.37.1.19,c.37.1.19 114128,114129 1l0wA 580 81.34 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2pr5A 132 81.38 1crzA 403 82.84 b.68.4.1,c.51.2.1 27629,33211 2c2iA 151 84.17 d.38.1.4 129670 1i2sA 282 84.73 e.3.1.1 71104 1st9A 143 85.11 c.47.1.10 98987 1sv6A 269 85.34 d.177.1.1 106043 2a8eA 220 85.75 d.296.1.1 126397 2gcuA 245 87.67