# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ob0A 170 3.40e-19 2ae6A 166 3.69e-19 d.108.1.1 126600 2cntA 160 5.16e-19 2b5gA 171 1.81e-18 d.108.1.1 127892 2j8mA 172 2.03e-18 1tiqA 180 2.19e-18 d.108.1.1 107010 2cy2A 174 4.01e-18 d.108.1.1 131016 1yr0A 175 4.09e-18 d.108.1.1 123905 1vhsA 175 4.11e-18 d.108.1.1 100698 2pdoA 144 4.18e-18 1mk4A 157 6.43e-18 d.108.1.1 84979 1kuxA 207 7.31e-18 d.108.1.1 73021 2fiaA 162 8.47e-18 d.108.1.1 133514 2ge3A 170 8.95e-18 d.108.1.1 135044 1yvoA 172 1.37e-17 d.108.1.1 124106 1s3zA 165 1.43e-17 d.108.1.1 105250 2fe7A 166 1.56e-17 d.108.1.1 133325 3blnA 143 1.57e-17 2q4vA 170 1.59e-17 d.108.1.1 139878 1l0cA 207 1.86e-17 d.108.1.1 73393 2reeA 224 2.04e-17 2dxqA 150 2.05e-17 2i6cA 160 2.11e-17 d.108.1.1 137095 2euiA 153 2.51e-17 d.108.1.1 132387 2r7hA 177 2.59e-17 2oh1A 179 4.23e-17 1gheA 177 4.86e-17 d.108.1.1 76222 3c26A 266 4.94e-17 1z4eA 153 7.11e-17 d.108.1.1 124431 1yreA 197 8.94e-17 d.108.1.1 123919 2fl4A 149 9.77e-17 d.108.1.1 133706 1nslA 184 1.11e-16 d.108.1.1 86137 1y9kA 157 1.58e-16 d.108.1.1 122779 1z4rA 168 1.59e-16 d.108.1.1 124444 2r1iA 172 1.65e-16 1b87A 181 1.77e-16 d.108.1.1 40797 1wwzA 159 2.23e-16 d.108.1.1 121380 1s7kA 182 2.27e-16 d.108.1.1 118878 1qsoA 149 3.85e-16 d.108.1.1 40812 1qsmA 152 3.95e-16 d.108.1.1 40808 1on0A 158 3.98e-16 d.108.1.1 87095 2i79A 172 4.88e-16 1yghA 164 5.30e-16 d.108.1.1 40802 1xebA 150 7.05e-16 d.108.1.1 115219 2a4nA 182 7.48e-16 d.108.1.1 126159 2hv2A 400 7.78e-16 2o28A 184 8.24e-16 2ozgA 396 8.44e-16 1u6mA 199 8.62e-16 d.108.1.1 113069 1cjwA 166 1.02e-15 d.108.1.1 40818 1qstA 160 1.31e-15 d.108.1.1 40804 1q2yA 140 1.49e-15 d.108.1.1 95655 1yvkA 163 1.53e-15 d.108.1.1 124101 1sqhA 312 1.75e-15 d.108.1.5 98966 1y7rA 133 2.13e-15 d.108.1.1 122716 1yx0A 159 2.43e-15 d.108.1.1 124168 2qecA 204 2.94e-15 2bswA 146 3.24e-15 d.108.1.1 129127 1bo4A 168 3.40e-15 d.108.1.1 40798 2fiwA 172 4.77e-15 d.108.1.1 133539 2c27A 315 5.26e-15 d.108.1.1 129659 2pc1A 201 7.67e-15 2ft0A 235 9.12e-15 2q0yA 153 1.08e-14 2atrA 138 1.17e-14 d.108.1.1 127305 1i1dA 161 1.35e-14 d.108.1.1 61526 1yk3A 210 1.46e-14 d.108.1.1 123493 2fckA 181 1.52e-14 d.108.1.1 133272 1n71A 180 1.57e-14 d.108.1.1 85370 2i00A 406 1.68e-14 1y9wA 140 2.79e-14 d.108.1.1 122783 1m4iA 181 2.89e-14 d.108.1.1 74457 1vkcA 158 4.30e-14 d.108.1.1 113663 2jdcA 146 5.83e-14 2g3aA 152 8.12e-14 d.108.1.1 134557 1i12A 160 1.46e-13 d.108.1.1 61515 2ganA 190 3.92e-13 d.108.1.1 134889 2fsrA 195 6.09e-13 d.108.1.1 134036 1p0hA 318 6.60e-13 d.108.1.1 93866 2ozhA 142 6.66e-13 2prbA 196 3.92e-11 2qmlA 198 1.66e-10 2z10A 194 1.19e-09 2aj6A 159 6.93e-06 d.108.1.1 126841 1ro5A 201 2.51e-05 d.108.1.3 105023 2g0bA 198 0.000477 2r98A 456 0.000934 1ne9A 335 0.006445 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.009395 1iicA 422 0.03187 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.05241 d.108.1.1 115561 2pq8A 278 0.1013 2givA 295 0.1027 d.108.1.1 135253 1bob 320 0.1909 1bobA 320 0.3536 d.108.1.1 40816 1yleA 342 0.4388 d.108.1.8 123647 1kzfA 230 0.4654 d.108.1.3 73354 2p0wA 324 0.8299 1fy7A 278 1.502 d.108.1.1 40817 1svjA 156 2.375 d.220.1.1 106049 1lrzA 426 4.010 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d59A 144 4.045 c.2.1.8 131266 2hqyA 305 10.29 2v0uA 146 13.32 2pdrA 149 13.94 1pvmA 184 15.91 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2cxaA 256 21.33 d.108.1.6 130993 2pjkA 178 23.84 1han 297 25.29 1kllA 130 26.62 d.32.1.2 72720 2rgqA 144 29.35 2uubK 129 33.73 c.55.4.1 139942 1f1xA 322 35.00 d.32.1.3,d.32.1.3 83208,83209 1n9bA 265 40.26 e.3.1.1 85463 1xtaA 221 41.19 2pd8A 149 41.82 1p0zA 131 43.37 d.110.6.1 93882 1m5q1 130 44.09 1o50A 157 49.15 d.37.1.1,d.37.1.1 92478,92479 2c2iA 151 49.79 d.38.1.4 129670 1ct5A 256 51.61 c.1.6.2 28663 2ehzA 302 51.67 1qipA 183 60.42 d.32.1.1 38470 2oxnA 340 62.28 2hmaA 376 72.79 1f1uA 323 73.12 d.32.1.3,d.32.1.3 83200,83201 1ecsA 126 73.79 d.32.1.2 59407 2a8eA 220 77.34 d.296.1.1 126397 1lvmA 229 79.65 b.47.1.3 78243 2dyuA 334 79.95 2qh0A 138 80.72 2b1kA 168 82.12 2d73A 738 87.47 2pr5A 132 89.55