# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ob0A 170 3.38e-21 2ae6A 166 3.81e-21 d.108.1.1 126600 2cntA 160 7.71e-21 2b5gA 171 2.51e-20 d.108.1.1 127892 1tiqA 180 4.02e-20 d.108.1.1 107010 1vhsA 175 5.75e-20 d.108.1.1 100698 2j8mA 172 5.85e-20 1kuxA 207 7.67e-20 d.108.1.1 73021 2cy2A 174 8.43e-20 d.108.1.1 131016 1mk4A 157 9.24e-20 d.108.1.1 84979 2q4vA 170 1.06e-19 d.108.1.1 139878 1yr0A 175 1.22e-19 d.108.1.1 123905 2fiaA 162 1.27e-19 d.108.1.1 133514 2pdoA 144 1.32e-19 3blnA 143 1.73e-19 2ge3A 170 2.00e-19 d.108.1.1 135044 1l0cA 207 2.60e-19 d.108.1.1 73393 2reeA 224 2.75e-19 2fe7A 166 2.82e-19 d.108.1.1 133325 2i6cA 160 2.92e-19 d.108.1.1 137095 2euiA 153 3.76e-19 d.108.1.1 132387 1yvoA 172 3.97e-19 d.108.1.1 124106 2dxqA 150 4.52e-19 1yreA 197 4.73e-19 d.108.1.1 123919 1s3zA 165 5.29e-19 d.108.1.1 105250 1gheA 177 5.41e-19 d.108.1.1 76222 2r7hA 177 7.64e-19 3c26A 266 8.06e-19 2oh1A 179 8.53e-19 2fl4A 149 9.77e-19 d.108.1.1 133706 1nslA 184 1.18e-18 d.108.1.1 86137 1z4eA 153 2.08e-18 d.108.1.1 124431 1z4rA 168 2.33e-18 d.108.1.1 124444 1y9kA 157 2.65e-18 d.108.1.1 122779 1b87A 181 4.43e-18 d.108.1.1 40797 1qsmA 152 4.74e-18 d.108.1.1 40808 2r1iA 172 5.46e-18 1qsoA 149 6.56e-18 d.108.1.1 40812 2o28A 184 7.51e-18 1s7kA 182 9.37e-18 d.108.1.1 118878 1on0A 158 9.67e-18 d.108.1.1 87095 1u6mA 199 1.17e-17 d.108.1.1 113069 1wwzA 159 1.34e-17 d.108.1.1 121380 1yvkA 163 1.36e-17 d.108.1.1 124101 2ozgA 396 1.39e-17 1xebA 150 1.45e-17 d.108.1.1 115219 1yghA 164 1.54e-17 d.108.1.1 40802 1q2yA 140 2.35e-17 d.108.1.1 95655 1yx0A 159 2.41e-17 d.108.1.1 124168 2a4nA 182 2.89e-17 d.108.1.1 126159 2i79A 172 3.08e-17 1y7rA 133 3.73e-17 d.108.1.1 122716 2hv2A 400 4.05e-17 1qstA 160 4.57e-17 d.108.1.1 40804 1cjwA 166 5.09e-17 d.108.1.1 40818 1sqhA 312 5.14e-17 d.108.1.5 98966 2qecA 204 1.17e-16 2bswA 146 1.26e-16 d.108.1.1 129127 2atrA 138 2.06e-16 d.108.1.1 127305 2fiwA 172 2.19e-16 d.108.1.1 133539 1bo4A 168 3.02e-16 d.108.1.1 40798 2c27A 315 3.39e-16 d.108.1.1 129659 1i1dA 161 3.45e-16 d.108.1.1 61526 2ft0A 235 4.51e-16 2q0yA 153 5.42e-16 2i00A 406 5.52e-16 1n71A 180 5.67e-16 d.108.1.1 85370 2fckA 181 5.88e-16 d.108.1.1 133272 1y9wA 140 6.30e-16 d.108.1.1 122783 1yk3A 210 7.52e-16 d.108.1.1 123493 2pc1A 201 8.09e-16 1m4iA 181 8.65e-16 d.108.1.1 74457 2jdcA 146 1.22e-15 2g3aA 152 2.87e-15 d.108.1.1 134557 1vkcA 158 2.99e-15 d.108.1.1 113663 2ganA 190 1.04e-14 d.108.1.1 134889 1i12A 160 1.68e-14 d.108.1.1 61515 2ozhA 142 1.88e-14 2fsrA 195 4.77e-14 d.108.1.1 134036 1p0hA 318 5.52e-14 d.108.1.1 93866 2prbA 196 1.09e-11 2qmlA 198 1.72e-11 2z10A 194 9.96e-11 2aj6A 159 5.34e-06 d.108.1.1 126841 1ro5A 201 2.44e-05 d.108.1.3 105023 2g0bA 198 0.000120 2r98A 456 0.000993 1ne9A 335 0.004784 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.007837 1iicA 422 0.009161 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.07743 d.108.1.1 115561 2pq8A 278 0.1120 2givA 295 0.1892 d.108.1.1 135253 1bob 320 0.2818 1bobA 320 0.4037 d.108.1.1 40816 1kzfA 230 0.4394 d.108.1.3 73354 1yleA 342 0.6494 d.108.1.8 123647 2p0wA 324 0.8111 1lrzA 426 1.664 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1svjA 156 2.139 d.220.1.1 106049 2d59A 144 3.063 c.2.1.8 131266 1fy7A 278 3.129 d.108.1.1 40817 2rgqA 144 15.62 2hqyA 305 17.02 1n9bA 265 17.62 e.3.1.1 85463 1han 297 19.44 1f1xA 322 22.50 d.32.1.3,d.32.1.3 83208,83209 1m5q1 130 26.57 2ehzA 302 32.39 1kw3B 292 32.56 d.32.1.3,d.32.1.3 77549,77550 2yzqA 282 33.98 1p0zA 131 36.69 d.110.6.1 93882 2go9A 161 37.70 1kllA 130 37.90 d.32.1.2 72720 2v0uA 146 39.86 1o50A 157 43.63 d.37.1.1,d.37.1.1 92478,92479 2gimA 106 43.68 b.6.1.1 135244 2a8eA 220 45.10 d.296.1.1 126397 2c2iA 151 53.21 d.38.1.4 129670 2uubK 129 53.63 c.55.4.1 139942 3c8cA 240 53.77 2qqzA 126 54.51 1f9zA 135 58.17 d.32.1.1 38484 1pvmA 184 58.93 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1pn2A 280 60.86 d.38.1.4,d.38.1.4 94930,94931 1s6lA 212 62.46 2pdrA 149 63.50 2pr5A 132 66.06 2pjkA 178 67.05 1xtaA 221 70.39 1nx8A 273 71.34 b.82.2.8 86374 1qipA 183 72.44 d.32.1.1 38470 2pd8A 149 78.72 2oxnA 340 79.44 1f1uA 323 80.38 d.32.1.3,d.32.1.3 83200,83201 1lvmA 229 80.42 b.47.1.3 78243 2ditA 112 82.35 d.58.7.1 131533 2cxaA 256 84.41 d.108.1.6 130993 1lkdA 297 85.08 d.32.1.3,d.32.1.3 78059,78060 4blmA 265 87.51 e.3.1.1 42721 2hmaA 376 89.59