# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 1.02e-19 d.108.1.1 126600 2ob0A 170 1.25e-19 2cntA 160 2.07e-19 2b5gA 171 3.93e-19 d.108.1.1 127892 1tiqA 180 5.22e-19 d.108.1.1 107010 1vhsA 175 1.03e-18 d.108.1.1 100698 2j8mA 172 1.11e-18 1yr0A 175 1.48e-18 d.108.1.1 123905 2cy2A 174 1.49e-18 d.108.1.1 131016 2pdoA 144 1.54e-18 1kuxA 207 1.63e-18 d.108.1.1 73021 1mk4A 157 1.72e-18 d.108.1.1 84979 2q4vA 170 2.08e-18 d.108.1.1 139878 2fiaA 162 3.23e-18 d.108.1.1 133514 2i6cA 160 3.23e-18 d.108.1.1 137095 2ge3A 170 3.57e-18 d.108.1.1 135044 2fe7A 166 3.75e-18 d.108.1.1 133325 1s3zA 165 3.98e-18 d.108.1.1 105250 3blnA 143 5.46e-18 2reeA 224 5.47e-18 2dxqA 150 5.63e-18 1l0cA 207 5.71e-18 d.108.1.1 73393 2euiA 153 7.32e-18 d.108.1.1 132387 1yvoA 172 7.52e-18 d.108.1.1 124106 3c26A 266 9.36e-18 2oh1A 179 1.08e-17 2fl4A 149 1.18e-17 d.108.1.1 133706 1gheA 177 1.22e-17 d.108.1.1 76222 2r7hA 177 1.32e-17 1nslA 184 1.49e-17 d.108.1.1 86137 1z4eA 153 2.06e-17 d.108.1.1 124431 1yreA 197 2.24e-17 d.108.1.1 123919 1y9kA 157 3.38e-17 d.108.1.1 122779 1z4rA 168 6.74e-17 d.108.1.1 124444 1u6mA 199 7.55e-17 d.108.1.1 113069 1qsmA 152 7.63e-17 d.108.1.1 40808 2r1iA 172 9.00e-17 1on0A 158 1.04e-16 d.108.1.1 87095 1wwzA 159 1.18e-16 d.108.1.1 121380 1qsoA 149 1.21e-16 d.108.1.1 40812 1b87A 181 1.21e-16 d.108.1.1 40797 1s7kA 182 1.24e-16 d.108.1.1 118878 2ozgA 396 1.36e-16 2o28A 184 1.54e-16 1yvkA 163 1.83e-16 d.108.1.1 124101 1xebA 150 1.97e-16 d.108.1.1 115219 2a4nA 182 2.14e-16 d.108.1.1 126159 1q2yA 140 3.21e-16 d.108.1.1 95655 2i79A 172 3.29e-16 1yx0A 159 3.92e-16 d.108.1.1 124168 1cjwA 166 4.18e-16 d.108.1.1 40818 1yghA 164 4.56e-16 d.108.1.1 40802 1qstA 160 6.39e-16 d.108.1.1 40804 2fiwA 172 7.42e-16 d.108.1.1 133539 1sqhA 312 7.66e-16 d.108.1.5 98966 1y7rA 133 8.51e-16 d.108.1.1 122716 2hv2A 400 1.15e-15 2bswA 146 1.26e-15 d.108.1.1 129127 2qecA 204 1.45e-15 2q0yA 153 1.70e-15 2atrA 138 2.15e-15 d.108.1.1 127305 1bo4A 168 2.19e-15 d.108.1.1 40798 1i1dA 161 2.49e-15 d.108.1.1 61526 2c27A 315 2.98e-15 d.108.1.1 129659 1yk3A 210 3.81e-15 d.108.1.1 123493 1n71A 180 4.66e-15 d.108.1.1 85370 2ft0A 235 4.84e-15 2pc1A 201 5.39e-15 2fckA 181 6.14e-15 d.108.1.1 133272 1y9wA 140 6.66e-15 d.108.1.1 122783 2i00A 406 7.41e-15 1vkcA 158 8.10e-15 d.108.1.1 113663 2jdcA 146 1.40e-14 1m4iA 181 1.72e-14 d.108.1.1 74457 2g3aA 152 2.68e-14 d.108.1.1 134557 1i12A 160 4.27e-14 d.108.1.1 61515 2ganA 190 9.46e-14 d.108.1.1 134889 2ozhA 142 1.12e-13 2fsrA 195 2.26e-13 d.108.1.1 134036 1p0hA 318 2.73e-13 d.108.1.1 93866 2prbA 196 1.91e-11 2qmlA 198 3.01e-11 2z10A 194 1.66e-10 2aj6A 159 4.81e-06 d.108.1.1 126841 1ro5A 201 2.42e-05 d.108.1.3 105023 2g0bA 198 0.000156 2r98A 456 0.001002 1ne9A 335 0.004855 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.006657 1iicA 422 0.009007 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.05082 d.108.1.1 115561 2pq8A 278 0.1128 2givA 295 0.2058 d.108.1.1 135253 1yleA 342 0.2250 d.108.1.8 123647 1kzfA 230 0.2963 d.108.1.3 73354 1bob 320 0.3992 1bobA 320 0.5685 d.108.1.1 40816 2p0wA 324 0.6644 1lrzA 426 1.620 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d59A 144 3.272 c.2.1.8 131266 1fy7A 278 3.576 d.108.1.1 40817 1svjA 156 4.243 d.220.1.1 106049 2hqyA 305 7.669 1kllA 130 20.46 d.32.1.2 72720 1pvmA 184 21.44 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1f1xA 322 23.24 d.32.1.3,d.32.1.3 83208,83209 2uubK 129 23.59 c.55.4.1 139942 1ecsA 126 27.97 d.32.1.2 59407 1p0zA 131 31.46 d.110.6.1 93882 2v0uA 146 31.50 1o50A 157 33.36 d.37.1.1,d.37.1.1 92478,92479 2pdrA 149 34.38 1n9bA 265 34.97 e.3.1.1 85463 2rgqA 144 38.88 1ss4A 153 42.10 d.32.1.6 105976 2ehzA 302 46.81 1pu1A 94 47.94 d.266.1.1 104307 2d73A 738 48.40 2cxaA 256 48.95 d.108.1.6 130993 1xtaA 221 50.21 1m5q1 130 55.13 1pv1A 299 56.66 c.69.1.34 111639 2pjkA 178 56.87 2qqzA 126 58.66 2a4xA 138 58.88 d.32.1.2 126166 2cvbA 188 61.13 c.47.1.10 130859 2pr5A 132 61.32 2a8eA 220 62.10 d.296.1.1 126397 1f9zA 135 62.79 d.32.1.1 38484 1f1uA 323 63.17 d.32.1.3,d.32.1.3 83200,83201 1qipA 183 63.70 d.32.1.1 38470 2pd8A 149 64.64 1pn2A 280 64.67 d.38.1.4,d.38.1.4 94930,94931 1qtoA 122 66.29 d.32.1.2 38494 2yzqA 282 66.52 1han 297 70.64 2oxnA 340 72.77 2ef7A 133 74.44 1c0pA 363 77.20 c.4.1.2,d.16.1.3 30647,37934 1zoyA 622 77.97 3c8cA 240 78.39 1xkfA 133 79.27 d.37.1.1,d.37.1.1 122077,122078 1g13A 162 79.46 b.95.1.1 60194 1s6lA 212 80.16 2e5vA 472 82.35 1kw3B 292 82.71 d.32.1.3,d.32.1.3 77549,77550 2hyxA 352 83.23 2iugA 120 83.42 2vqeK 129 83.62 2pfiA 164 85.37 1ve0A 134 87.14 1ct5A 256 87.19 c.1.6.2 28663 2gj3A 120 87.69 1nkiA 135 88.30 d.32.1.2 91941 3b47A 134 89.94